Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 190 2e-43
>seq1315
Length=11532
Score = 190 bits (210), Expect = 2e-43
Identities = 421/629 (67%), Gaps = 2/629 (0%)
Strand=Plus/Minus
Query 94003 TGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCC 94062
||||| | || ||||| |||| || || || || ||| ||| ||| | |||||
Sbjct 956 TGTGCCATGATTTCAAAGAACGCTGGTGGTATTGGTCTCAATGTTCACAGAATCCGTGCA 897
Query 94063 AGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGG 94122
| ||| | ||||| ||||| || || | ||||||||| |||| |||||||| ||
Sbjct 896 ACCGGTGCTTACATTGCTGGTACAAACGGAAACTCCAACGGAATCGTTCCTATGCTTCGA 837
Query 94123 GTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTC 94182
|| ||||||||| | || || || || || || |||||| | | | ||| |||||
Sbjct 836 GTTTTCAACAACACCGCCCGATATGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCTTTC 777
Query 94183 GCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAAC 94242
|| | || || ||||| |||||||| || || | ||| ||||||| |||||||||
Sbjct 776 GCCATTTACCTTGAGCCATGGCACGCTGATGTTTTCGAGTTCCTCGACCTCCGAAAGAAC 717
Query 94243 CACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTT 94302
||||| || || || | ||| | || |||||||||||||||||| | ||||| ||
Sbjct 716 CACGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTC 657
Query 94303 TTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCC 94362
|| ||||| || || || || ||| || ||||| | | || || || || |||||
Sbjct 656 TTCATGAAGCGTGTTGAAAAGAACCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCT 597
Query 94363 GGACTGTCCGACGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCA 94421
|| || ||||||| | || | || || || | ||||||| ||||| || |
Sbjct 596 GGCTTGGCCGACGTCTACGG-TGACGAGTTCGAGGCTTTGTATGAGAAATACGAGTCTGA 538
Query 94422 GGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACA 94481
|||||||| | || || | || ||||| ||| | ||| | || | ||
Sbjct 537 GGGCAAGGGTCGTAAAAGCATCAAGGCCCAAAAGCTTTGGTACTCTATCCTCGAGGCTCA 478
Query 94482 GGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCA 94541
||||| || | || | ||| | | |||||| || |||| ||| ||||||
Sbjct 477 AACTGAGACCGGAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCA 418
Query 94542 GCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTC 94601
|| | || || ||| |||||| || |||| || ||||||||||| || | |
Sbjct 417 AAAGAATCTTGGTACCATCCGGAGCTCCAACTTGTGTACTGAGATTGTCGAATACTGTGC 358
Query 94602 TCCGGACGAGATTGCTGTGTGTAACCTGG 94630
|| || ||| ||||||| || ||| |||
Sbjct 357 ACCTGATGAGGTTGCTGTTTGCAACTTGG 329
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494662911794040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |