Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 89.7 5e-13
>seq1973
Length=9094
Score = 89.7 bits (98), Expect = 5e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||||||||||||||||||||| | ||||| ||||| | ||| || |||| |
Sbjct 6327 CTCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCATCCTCCAATTGCTTGCCGGCGAA 6268
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
|| | |||||||| ||||| || ||||| || || || ||| ||| || | |
Sbjct 6267 AATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATT 6208
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | ||||| | ||||| || || | || | || || || |||||||| || ||
Sbjct 6207 ATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAAC 6148
Query 138603 AAAAATCTGCAT 138614
|| ||||||||
Sbjct 6147 GAAGATCTGCAT 6136
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || ||||| | | | |||||||| || || |||||||||
Sbjct 6134 CCACCACGGAGACGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAG 6075
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||||||||| || |||| | || || |||||||| ||||| ||
Sbjct 6074 AGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGA 6015
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| || || || ||| ||| || | | || | ||||| | || || |||
Sbjct 6014 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTCGACC 5955
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || | || || || || ||||| || || || || |||||
Sbjct 5954 TCGAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 5908
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | ||| || || | | | |||||||| || || |||||||||
Sbjct 5906 CCACCACGGAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAG 5847
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||||||||| || |||| | |||| || |||||||||||||| ||
Sbjct 5846 AGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGTCCGGTGGG 5787
Query 138508 ATACCTTCTTTGTC 138521
|| || || |||||
Sbjct 5786 ATGCCCTCCTTGTC 5773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496201924223280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |