Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1315 145 9e-30 seq2965 120 4e-22 seq5294 100 3e-16 seq136 89.7 6e-13 >seq1315 Length=11532 Score = 145 bits (160), Expect = 9e-30 Identities = 670/1051 (64%), Gaps = 33/1051 (3%) Strand=Plus/Plus Query 116246 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 116305 |||| || ||||||||||| ||||| |||| || | || | | ||| ||||| | Sbjct 134 CATCAGCAAGACCTTGGACGCCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTG 193 Query 116306 CGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 116362 | ||| || || || | || |||||| | | | || | |||||| ||||| Sbjct 194 C---CTCAGGAACTGGGTAGTAGTTGACATCGATGATCTTGTTCAAGTTTTTGACGACAA 250 Query 116363 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 116422 | | || ||| |||||||| | | | ||| || || ||||| |||| ||||| Sbjct 251 CTTGGCAGACTTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATATG 310 Query 116423 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 116482 | || || || | || |||| || || |||| |||||| || ||| || | Sbjct 311 TTGGGAGAGCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGA 370 Query 116483 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 116542 ||| || |||||||| || || ||| ||||| || | |||||||| || |||| Sbjct 371 CAATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTC 430 Query 116543 TGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 116602 ||| || ||||||||||| ||||| | || | || ||||| ||||| | || ||| | Sbjct 431 GGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGA 490 Query 116603 TAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CT 116656 ||| | ||| | || ||| | || | | || |||| |||| || Sbjct 491 TAGAGTACCAAA-----GCTTTTGGGCCT-TGATGCTTTTACGACCCTTGCCCTCAGACT 544 Query 116657 CGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCT 116716 |||| || || | ||||| ||||| ||||| | || | | || || || Sbjct 545 CGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACT 604 Query 116717 TATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTG 116776 | || || | | | ||| | || ||||| |||||||||||||| |||| Sbjct 605 CGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTG 664 Query 116777 GGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 116836 | |||||||| || |||||||||| || ||| | || || | || || || | Sbjct 665 GAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTC 724 Query 116837 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC 116895 | | || | || || | | ||| |||||||| || || ||||| | |||| | || Sbjct 725 GGAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCAC 784 Query 116896 -----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAA 116950 | |||| |||| | || | ||||| | || || ||| || || |||| Sbjct 785 CAGGACGCTTG---TTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAA 841 Query 116951 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG-ACTTGTTGGCT 117009 |||| |||| ||| || | || | || ||||| || ||| || || ||| || Sbjct 842 GCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTT-GCA 900 Query 117010 CTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCC 117069 | || ||| | | | ||||||||| || || |||||| || || || | Sbjct 901 CGGATTCTGTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATC 960 Query 117070 GTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTC 117129 | | || | ||||| ||||| || ||| |||| | |||| |||||||| Sbjct 961 TTCAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGAT 1020 Query 117130 GACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA 117189 || | ||||| |||||||||||| ||| || ||||||| |||||| |||| || Sbjct 1021 GAAAGTTGTGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAA-GTA 1079 Query 117190 CCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATAC 117247 ||| ||||||| | ||||||||| | | ||| ||| || || ||||| || | Sbjct 1080 -TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTC 1138 Query 117248 CGATTGAGACCCGCATAAACATGTATTGGGG 117278 ||| | ||| ||||||| ||| | ||| || Sbjct 1139 CGACAGCGACACGCATAATCATATGTTGTGG 1169 >seq2965 Length=6591 Score = 120 bits (132), Expect = 4e-22 Identities = 298/450 (66%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || |||| ||||||||||||||||| ||||| || |||| ||| |||||||| Sbjct 6298 GTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTCTCCAT 6239 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350 || || |||||||| || ||| || || | |||||| || Sbjct 6238 GAAGTCGAATGGGTTGGCAACCTTGTAAACCTTTTCATTACCGAGAGAGAGGAGGAGCCG 6179 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 ||| | |||| |||||||||| | |||| | | |||||| |||| || ||| Sbjct 6178 ATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGAGCACA 6119 Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTG 127470 || || || || | |||| | | |||||| || ||||| || | || ||| || Sbjct 6118 AGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCTTG 6059 Query 127471 AATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCAAACTCTT 127529 | | || | || | || || | |||| |||||| || || || Sbjct 6058 GACTGCTGCCTTACTTGGGCGAT-GCTTCAAGTGGGAGAAGAGAAGGCATGCGAAGTCGG 6000 Query 127530 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 127589 |||||||||||||||||||||||| | || || |||||| ||||| | |||||| | Sbjct 5999 TGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGC 5940 Query 127590 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 127649 | ||||||||||||||||| || | || || ||| ||||||||| ||||| || Sbjct 5939 CACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACGG 5880 Query 127650 ACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || || |||| ||||| | ||||||| Sbjct 5879 CAGCAAAGGCAACGAGACGTTGAGCAAAGG 5850 >seq5294 Length=3402 Score = 100 bits (110), Expect = 3e-16 Identities = 317/484 (65%), Gaps = 12/484 (2%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| || ||| || ||| ||| ||||| |||||||| || |||||||| | Sbjct 640 TGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGAC 581 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 || ||||||| | | |||||| || | ||| | ||||| | |||| Sbjct 580 CCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTCATGT 521 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || |||||| ||| ||||| || || || || || || || ||||| | || || Sbjct 520 GGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAA-CA 462 Query 115706 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 115763 || | | | ||| ||||||| ||||| ||||||| ||| |||||| ||||||| Sbjct 461 -ATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGAT 403 Query 115764 ATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGA---TCCTTCATATCCTT 115820 | | ||||||||| || ||||| | | | |||| | | |||||| | | Sbjct 402 GTTTGGAACATTTTGGATCGATCCACCATC---GGCAATGATACGGTTCTTCATGTTATC 346 Query 115821 TGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTC 115880 |||||||| || || | ||||||| | || |||||||| ||||| Sbjct 345 GGACCAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTC 286 Query 115881 ACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGT 115939 || || || || | ||| |||||||||| ||||||||||| |||||||| ||| Sbjct 285 TCCAGCAAGAACACGCCG-AGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGA 227 Query 115940 TACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGA 115999 || | ||| || || ||| || ||||| || || | || | |||||||||| Sbjct 226 ATCCAAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGA 167 Query 116000 GACC 116003 ||| Sbjct 166 TACC 163 >seq136 Length=27106 Score = 89.7 bits (98), Expect = 6e-13 Identities = 219/327 (67%), Gaps = 10/327 (3%) Strand=Plus/Plus Query 12787 TATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCG 12846 ||| ||| ||||||||||| || | | |||||||| || ||| || ||||||||| Sbjct 21146 TATTGAAACCATCCATCTCGGTTAGAATTTGATTGAGAGTAGCTTCTCGCTCATCATTCC 21205 Query 12847 CGGG--CATACCACCCGCACTG----CGTTGCTTACCGACGGCGTCAATTTCGTCAATGA 12900 | || | | ||| || || ||| || | ||| || ||||| ||||||| Sbjct 21206 CACCACCAAATGAACCGGCCTTTCCACGAGCCTTTCCAATGGCATCGATTTCATCAATGA 21265 Query 12901 AAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCAC 12960 | | ||||| || ||| | | ||| | |||||| |||||| ||||| ||||| Sbjct 21266 AGATAATACAAGGGGTATTCTTTCTGGCCATAGCAAAGAGATCTCGAACTCTGGAGGCAC 21325 Query 12961 CGACACCCACAAACATCTCCACAAAATTGG--CGGCGGAACATTGGATGAAGGGGACGTT 13018 | ||||| ||||||||||||||||| | || | | | ||| | || ||| || || Sbjct 21326 CAACACCAACAAACATCTCCACAAACTCGGAACCACTG-ACACT-GAAGAAAGGTACACC 21383 Query 13019 GGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAG 13078 ||||| || || |||| || || | ||||| || || || ||| || | || Sbjct 21384 TGATTCTCCAGCTGTGGCCTTTGCTAGTAAAGTCTTACCAGTACCAGGTGGACCAGAAAG 21443 Query 13079 AAGGGCACCACGTGGGATCCTGGCACC 13105 || ||| || || || ||| | ||||| Sbjct 21444 AATGGCTCCTCGAGGAATCTTAGCACC 21470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613432436478840