Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 145 9e-30
seq2965 120 4e-22
seq5294 100 3e-16
seq136 89.7 6e-13
>seq1315
Length=11532
Score = 145 bits (160), Expect = 9e-30
Identities = 670/1051 (64%), Gaps = 33/1051 (3%)
Strand=Plus/Plus
Query 116246 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 116305
|||| || ||||||||||| ||||| |||| || | || | | ||| ||||| |
Sbjct 134 CATCAGCAAGACCTTGGACGCCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTG 193
Query 116306 CGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 116362
| ||| || || || | || |||||| | | | || | |||||| |||||
Sbjct 194 C---CTCAGGAACTGGGTAGTAGTTGACATCGATGATCTTGTTCAAGTTTTTGACGACAA 250
Query 116363 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 116422
| | || ||| |||||||| | | | ||| || || ||||| |||| |||||
Sbjct 251 CTTGGCAGACTTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATATG 310
Query 116423 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 116482
| || || || | || |||| || || |||| |||||| || ||| || |
Sbjct 311 TTGGGAGAGCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGA 370
Query 116483 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 116542
||| || |||||||| || || ||| ||||| || | |||||||| || ||||
Sbjct 371 CAATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTC 430
Query 116543 TGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 116602
||| || ||||||||||| ||||| | || | || ||||| ||||| | || ||| |
Sbjct 431 GGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGA 490
Query 116603 TAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CT 116656
||| | ||| | || ||| | || | | || |||| |||| ||
Sbjct 491 TAGAGTACCAAA-----GCTTTTGGGCCT-TGATGCTTTTACGACCCTTGCCCTCAGACT 544
Query 116657 CGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCT 116716
|||| || || | ||||| ||||| ||||| | || | | || || ||
Sbjct 545 CGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACT 604
Query 116717 TATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTG 116776
| || || | | | ||| | || ||||| |||||||||||||| ||||
Sbjct 605 CGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTG 664
Query 116777 GGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 116836
| |||||||| || |||||||||| || ||| | || || | || || || |
Sbjct 665 GAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTC 724
Query 116837 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC 116895
| | || | || || | | ||| |||||||| || || ||||| | |||| | ||
Sbjct 725 GGAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCAC 784
Query 116896 -----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAA 116950
| |||| |||| | || | ||||| | || || ||| || || ||||
Sbjct 785 CAGGACGCTTG---TTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAA 841
Query 116951 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG-ACTTGTTGGCT 117009
|||| |||| ||| || | || | || ||||| || ||| || || ||| ||
Sbjct 842 GCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTT-GCA 900
Query 117010 CTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCC 117069
| || ||| | | | ||||||||| || || |||||| || || || |
Sbjct 901 CGGATTCTGTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATC 960
Query 117070 GTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTC 117129
| | || | ||||| ||||| || ||| |||| | |||| ||||||||
Sbjct 961 TTCAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGAT 1020
Query 117130 GACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA 117189
|| | ||||| |||||||||||| ||| || ||||||| |||||| |||| ||
Sbjct 1021 GAAAGTTGTGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAA-GTA 1079
Query 117190 CCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATAC 117247
||| ||||||| | ||||||||| | | ||| ||| || || ||||| || |
Sbjct 1080 -TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTC 1138
Query 117248 CGATTGAGACCCGCATAAACATGTATTGGGG 117278
||| | ||| ||||||| ||| | ||| ||
Sbjct 1139 CGACAGCGACACGCATAATCATATGTTGTGG 1169
>seq2965
Length=6591
Score = 120 bits (132), Expect = 4e-22
Identities = 298/450 (66%), Gaps = 2/450 (0%)
Strand=Plus/Minus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
||| || |||| ||||||||||||||||| ||||| || |||| ||| ||||||||
Sbjct 6298 GTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTCTCCAT 6239
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350
|| || |||||||| || ||| || || | |||||| ||
Sbjct 6238 GAAGTCGAATGGGTTGGCAACCTTGTAAACCTTTTCATTACCGAGAGAGAGGAGGAGCCG 6179
Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410
||| | |||| |||||||||| | |||| | | |||||| |||| || |||
Sbjct 6178 ATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGAGCACA 6119
Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTG 127470
|| || || || | |||| | | |||||| || ||||| || | || ||| ||
Sbjct 6118 AGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCTTG 6059
Query 127471 AATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCAAACTCTT 127529
| | || | || | || || | |||| |||||| || || ||
Sbjct 6058 GACTGCTGCCTTACTTGGGCGAT-GCTTCAAGTGGGAGAAGAGAAGGCATGCGAAGTCGG 6000
Query 127530 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 127589
|||||||||||||||||||||||| | || || |||||| ||||| | |||||| |
Sbjct 5999 TGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGC 5940
Query 127590 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 127649
| ||||||||||||||||| || | || || ||| ||||||||| ||||| ||
Sbjct 5939 CACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACGG 5880
Query 127650 ACGCGAACGCAAATAGACGCTCGGCAAAGG 127679
|| || |||| ||||| | |||||||
Sbjct 5879 CAGCAAAGGCAACGAGACGTTGAGCAAAGG 5850
>seq5294
Length=3402
Score = 100 bits (110), Expect = 3e-16
Identities = 317/484 (65%), Gaps = 12/484 (2%)
Strand=Plus/Minus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
||||||| || ||| || ||| ||| ||||| |||||||| || |||||||| |
Sbjct 640 TGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGAC 581
Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645
|| ||||||| | | |||||| || | ||| | ||||| | ||||
Sbjct 580 CCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTCATGT 521
Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705
|| |||||| ||| ||||| || || || || || || || ||||| | || ||
Sbjct 520 GGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAA-CA 462
Query 115706 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 115763
|| | | | ||| ||||||| ||||| ||||||| ||| |||||| |||||||
Sbjct 461 -ATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGAT 403
Query 115764 ATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGA---TCCTTCATATCCTT 115820
| | ||||||||| || ||||| | | | |||| | | |||||| | |
Sbjct 402 GTTTGGAACATTTTGGATCGATCCACCATC---GGCAATGATACGGTTCTTCATGTTATC 346
Query 115821 TGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTC 115880
|||||||| || || | ||||||| | || |||||||| |||||
Sbjct 345 GGACCAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTC 286
Query 115881 ACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGT 115939
|| || || || | ||| |||||||||| ||||||||||| |||||||| |||
Sbjct 285 TCCAGCAAGAACACGCCG-AGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGA 227
Query 115940 TACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGA 115999
|| | ||| || || ||| || ||||| || || | || | ||||||||||
Sbjct 226 ATCCAAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGA 167
Query 116000 GACC 116003
|||
Sbjct 166 TACC 163
>seq136
Length=27106
Score = 89.7 bits (98), Expect = 6e-13
Identities = 219/327 (67%), Gaps = 10/327 (3%)
Strand=Plus/Plus
Query 12787 TATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCG 12846
||| ||| ||||||||||| || | | |||||||| || ||| || |||||||||
Sbjct 21146 TATTGAAACCATCCATCTCGGTTAGAATTTGATTGAGAGTAGCTTCTCGCTCATCATTCC 21205
Query 12847 CGGG--CATACCACCCGCACTG----CGTTGCTTACCGACGGCGTCAATTTCGTCAATGA 12900
| || | | ||| || || ||| || | ||| || ||||| |||||||
Sbjct 21206 CACCACCAAATGAACCGGCCTTTCCACGAGCCTTTCCAATGGCATCGATTTCATCAATGA 21265
Query 12901 AAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCAC 12960
| | ||||| || ||| | | ||| | |||||| |||||| ||||| |||||
Sbjct 21266 AGATAATACAAGGGGTATTCTTTCTGGCCATAGCAAAGAGATCTCGAACTCTGGAGGCAC 21325
Query 12961 CGACACCCACAAACATCTCCACAAAATTGG--CGGCGGAACATTGGATGAAGGGGACGTT 13018
| ||||| ||||||||||||||||| | || | | | ||| | || ||| || ||
Sbjct 21326 CAACACCAACAAACATCTCCACAAACTCGGAACCACTG-ACACT-GAAGAAAGGTACACC 21383
Query 13019 GGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAG 13078
||||| || || |||| || || | ||||| || || || ||| || | ||
Sbjct 21384 TGATTCTCCAGCTGTGGCCTTTGCTAGTAAAGTCTTACCAGTACCAGGTGGACCAGAAAG 21443
Query 13079 AAGGGCACCACGTGGGATCCTGGCACC 13105
|| ||| || || || ||| | |||||
Sbjct 21444 AATGGCTCCTCGAGGAATCTTAGCACC 21470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613432436478840
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