Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1973 125 2e-23 seq47 109 1e-18 seq231 96.9 8e-15 >seq1973 Length=9094 Score = 125 bits (138), Expect = 2e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| |||||||||||||||||||| || | |||||| |||| | ||| Sbjct 5616 CGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGATAGAGTA 5557 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||||||||| ||||| | || |||||||| || ||||| Sbjct 5556 CGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAAGCGTTGCTGGTCTGGGGGGATTCCC 5497 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| || | |||||| | | ||||| || | Sbjct 5496 TCCTTGTCCTGGATCTTGCTCTTGACGTTGTCTATGGTGTCCGACGACTCTACCTCGAGG 5437 Query 199589 GTGATCGTCTTACCCGTGA 199607 ||||| |||||||| |||| Sbjct 5436 GTGATGGTCTTACCGGTGA 5418 >seq47 Length=33200 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| || || || ||||||||||| |||| ||||||||| | | || | ||| || || Sbjct 24289 GACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGTCCGTCCTC 24230 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 || |||||||| |||||||| | |||||| || ||||| |||||| || ||||| Sbjct 24229 GAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTG 24170 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 |||||| ||| || |||| |||||| | | || || || | ||||| ||||| Sbjct 24169 AATCTTGGACTTAACATTATCGATGGTGTCCGAAGACTCAACCTCTAGGGTGATGGTCTT 24110 Query 199600 ACCCGTGA 199607 ||||||| Sbjct 24109 GCCCGTGA 24102 >seq231 Length=23011 Score = 96.9 bits (106), Expect = 8e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| || ||||| | ||| || | |||||| || || |||||||| ||||||| Sbjct 15342 CCTTTTGGATATTATAGTCTGACAAGGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGA 15401 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||| || ||||| |||||| || ||||| ||||| ||| || | Sbjct 15402 TCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15461 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || || | || || |||||||||||||| || || || | Sbjct 15462 CGATAGTGTCCGAAGACTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGA 15521 Query 199620 A 199620 | Sbjct 15522 A 15522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178774342008183