Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 125 8e-24
seq231 86.0 7e-12
>seq1973
Length=9094
Score = 125 bits (138), Expect = 8e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||| ||| | ||| |||||| ||||||||||||||||| || ||||| |||| |||
Sbjct 6116 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCCTCG 6057
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| |||||||||||||| || | ||||| || || | || | | |||||| ||| |
Sbjct 6056 AGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGG 5997
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||||| | | | ||||| ||||| || || | |||||||| |||
Sbjct 5996 ATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTCGACCTCGAGAGTGATGGTCTTG 5937
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || || || |||||||||||
Sbjct 5936 CCGGTAAGAGTCTTGACGAAGATTTGCAT 5908
Score = 122 bits (134), Expect = 1e-22
Identities = 129/170 (76%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||||||||||||||| || ||||| |||| ||||| ||||||||||| ||
Sbjct 5871 CTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAA 5812
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||| ||||| | || | || |||||||||| |||||| ||||| |
Sbjct 5811 GATAAGGCGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATT 5752
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571
| | || || || ||||| || || | |||||||| ||||| ||||
Sbjct 5751 GTCGATGGTATCACTGGATTCGACTTCGAGAGTGATGGTCTTGCCAGTCA 5702
Score = 113 bits (124), Expect = 5e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| |||||| || ||||||||||| || ||||||||| || || || | || ||
Sbjct 6345 CACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCATCCTC 6286
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
| |||||||||||||| ||||| ||||| || || | || | | |||||| |||
Sbjct 6285 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTG 6226
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||||| | | | ||||| || || || |||| || || || ||
Sbjct 6225 GATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTT 6166
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| ||||| || ||||| ||||| |||||
Sbjct 6165 GCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136
Score = 104 bits (114), Expect = 3e-17
Identities = 126/169 (75%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||| || |||||||| || | || ||||||||||| ||||| ||
Sbjct 5587 CTCCTTCTGAATGTTGTAATCAGATAGAGTACGACCATCCTCGAGCTGCTTTCCGGCAAA 5528
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||||||| |||||||| | || | | |||||||||| |||||| |||||| |||
Sbjct 5527 GATCAAGCGTTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGA-CGT 5469
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | ||||| ||| || || || | |||||||| || || ||
Sbjct 5468 TGTCTATGGTGTCCGACGACTCTACCTCGAGGGTGATGGTCTTACCGGT 5420
>seq231
Length=23011
Score = 86.0 bits (94), Expect = 7e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
||||||||||||| ||||| || | ||||| | || ||||| ||||| || ||||| |
Sbjct 15342 CCTTTTGGATATTATAGTCTGACAAGGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGA 15401
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| ||||| || || | || | | |||||||||| |||||| ||||| |
Sbjct 15402 TCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15461
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||| || || || || | || ||||| || ||||| || || || || |
Sbjct 15462 CGATAGTGTCCGAAGACTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGA 15521
Query 46584 AG 46585
||
Sbjct 15522 AG 15523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565169518635480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |