Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 104 2e-17
seq47 89.7 5e-13
>seq1973
Length=9094
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| || || || | || || ||| | |
Sbjct 6136 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 6195
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | || ||| |||| || || ||||| ||||| | || |||
Sbjct 6196 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCGGATCAA 6255
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | |||| ||| ||||| || |||| || | || ||||||| ||||||||||
Sbjct 6256 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACCCTCAGCGACTACAAC 6315
Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
|| |||||||| ||| || ||||||||||||| ||
Sbjct 6316 ATTCAAAAGGAGAGC-ACTTTGCATTTGGTGCTTCG 6350
Score = 87.8 bits (96), Expect = 2e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || | || ||||| |||||||| |||| ||||| ||| || | | |
Sbjct 5690 TCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTCGAATCCAGTGATACCATCG 5749
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
| | | || || || | ||||| ||||| || || | ||||||||||| || |
Sbjct 5750 ACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCGGACCAACAGCGCCTTA 5809
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
| | || ||||| || || || |||| ||||| ||| ||||||||| ||||| ||||
Sbjct 5810 TCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAATATCCAGAAGG 5869
Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459
| | || || || ||||| || |||
Sbjct 5870 AGTCTACCCTTCACTTGGTTCTCCGT 5895
>seq47
Length=33200
Score = 89.7 bits (98), Expect = 5e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325
|||||||||| ||||||||| | || || ||| | | |||| | | | | ||||
Sbjct 24102 TCACGGGCAAGACCATCACCCTAGAGGTTGAGTCTTCGGACACCATCGATAATGTTAAGT 24161
Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
|| || | ||||| ||||||||||| | || |||||||| | || | ||| || |
Sbjct 24162 CCAAGATTCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGTTTGATCTTCGCTGGAA 24221
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445
| || || || |||| || ||||| |||||||||||||| ||||| |||| || |
Sbjct 24222 AGCAACTCGAGGACGGACGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTC 24281
Query 38446 AT 38447
||
Sbjct 24282 AT 24283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500111847692160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |