Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2057 118 8e-21 seq281 107 1e-17 seq4876 104 2e-16 seq637 87.8 1e-11 >seq2057 Length=8825 Score = 118 bits (130), Expect = 8e-21 Identities = 473/742 (64%), Gaps = 2/742 (0%) Strand=Plus/Minus Query 517973 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 518032 ||| | |||| ||||||||||| || | ||| | | || || | || || ||| Sbjct 8535 TCTTTCTTATGCTTTCTCTTGAATTCGTTAACGAAGTGGTTAACGAGTCTGTTGTCGAAA 8476 Query 518033 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 518092 || ||||| ||||| | ||||| |||| || | | |||| || | || || || Sbjct 8475 TCCTCACCACCCAAGTGAGTATCACCTGCAGTGGACTTGACTTCAAAGATACCCTCCTCG 8416 Query 518093 AGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 518152 | | ||| || | ||||| ||||| ||||| | |||||| || || ||||| Sbjct 8415 ATGGTCAAGAGTGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACATTTCGC 8356 Query 518153 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 518212 || || || || || ||||| || |||| || || || || || || ||||| Sbjct 8355 TCACCCTCAACCTTCTTGTCCAGACCGTAGGCAATGGCGGCCGCGGTAGGCTCGTTAATG 8296 Query 518213 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 518272 || | | ||| || || ||||| || || ||||| || |||||||| | ||||||| Sbjct 8295 ATACGGAGAACGTTGAGGCCAGCGATCAGACCGGCATCCTTGGTGGCTTGACGTTGTGAA 8236 Query 518273 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCG 518332 ||| | || ||||| || || || | ||||| | | || | ||||| ||||| Sbjct 8235 TCGGTGAAGTATGCTGGGACTGTGACGACGGCGTTGTTGACGGTTCCACCAAGGTAAGCC 8176 Query 518333 CTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGC 518392 || || | | |||| || || ||||| || || |||| ||||| | ||||| Sbjct 8175 TCGGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATTTCCTCTGGTGTGAATTGC 8116 Query 518393 TTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTT 518451 || ||| |||| | | || | | | || || |||| | | || | Sbjct 8115 TTCTTCTCACCCTTGAACTCAATCTCGACGACA-GGCTTTCCACCACGGTCGAGGACGGT 8057 Query 518452 AAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAA 518511 || || ||| |||||||| | || || ||||| || | || || || | Sbjct 8056 GAAAGGGAAGTGCTTCATATCGGCCTGGACCTCCTGGTCTGCGAACTTTCGTCCGATCAG 7997 Query 518512 TCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATC 518571 || ||||| || || | || |||| || || || || | || | || || ||||| Sbjct 7996 ACGCTTTGCGTCGAAGACTGTGTTGGCGGGGTTCATGGCGACCTGGTTCTTTGCGGCATC 7937 Query 518572 TCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTG 518631 ||| |||||| | || || ||||| || | ||| | || || || || || || || || Sbjct 7936 TCCGATCAGACGCTCGGTATCTGTGAAGGCAACGAAGGAAGGGGTAGTTCGGTTTCCCTG 7877 Query 518632 ATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGT 518691 || || || ||||| |||| | | ||| | | | ||||||||| | || || Sbjct 7876 GTCGTTGGCGATAATCTCAATTCGATCATCACGGTAGATACCTACACAGGAGTAGGTGGT 7817 Query 518692 TCCTAAATCAATACCAATAGCA 518713 ||| | ||| ||||| || ||| Sbjct 7816 TCCAAGATCGATACCTATGGCA 7795 >seq281 Length=21818 Score = 107 bits (118), Expect = 1e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || ||||| ||||| |||| |||||||||||||| || || | | ||||| ||| ||| Sbjct 9564 TTCTCAAGTCCATATGCAAGCGCAGCAGCAGTTGGCTCGTTGACCACTCTCAGAACGTTA 9623 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 ||||| |||||| || ||||| || |||||||| | |||||||||||| || || || Sbjct 9624 AGACCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTAAGCT 9683 Query 518288 GGAACAGTAATAACGGC 518304 || || || | ||| || Sbjct 9684 GGGACTGTGACAACAGC 9700 >seq4876 Length=3815 Score = 104 bits (114), Expect = 2e-16 Identities = 254/383 (66%), Gaps = 3/383 (1%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| || || | ||| || |||||||| | ||| || || || || ||||| ||||| Sbjct 614 GCAGAGACGTTCATAATTCCGTTGGCATCAACATCGAAGGTAACCTCGATTTGTGGGACA 555 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | | ||||||||||| || | | ||| | |||| | || || || || Sbjct 554 CCACGTGGTGCAGGTGGGATACCAGTAAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTG 495 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 ||| || || ||||||||||| | ||||||| || ||| ||| || || || | Sbjct 494 GTGCGTTGACGCTCACCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAG 435 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 || | || || ||| || || || || || |||||||| |||| |||||| Sbjct 434 GTGGAGAAGACCTCGGACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATAAGCTTGGTC 375 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 || |||||| || || || | ||| ||||| | || | |||||| | |||| || Sbjct 374 ATTTGACCACCAGCAGTCTCGATACCGAGAGACAATGGCGCGACATCGAGGAGGAGGATC 315 Query 517559 T--TTTGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || | | || | | || | || ||||| || || || | |||||||| Sbjct 314 TCGTTGGTGGACTTGGAAGAGGTGTCTCCGGAGAGAATGGCAGCCTGGACGGCAGCACCG 255 Query 517616 TATGCAACAGCTTCATCAGGATT 517638 || ||||||||||||||||| || Sbjct 254 TAGGCAACAGCTTCATCAGGGTT 232 >seq637 Length=16155 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 671660 GAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACT 671719 || ||||||||||| | ||||| |||||||||||| | || | || || | || ||| Sbjct 4645 GAGTTTTTCTTCCACGCCATGGCTGGTCGTGAAGGTCTCATCGACACTGCAGTAAAGACT 4704 Query 671720 GCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATCAAACAAGAA 671779 || || ||||||||||||||| | ||||| ||| || |||||| ||| || Sbjct 4705 GCCGAAACTGGTTATATTCAACGTCGTCTTGTCAAAGCACTTGAAGATGTCATTGCCAAA 4764 Query 671780 TATGATGGTACAGTAAGAAAT 671800 |||||||| ||||| ||||| Sbjct 4765 TATGATGGAACAGTCCGAAAT 4785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780338622506794