Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq2057 118 8e-21
seq281 107 1e-17
seq4876 104 2e-16
seq637 87.8 1e-11
>seq2057
Length=8825
Score = 118 bits (130), Expect = 8e-21
Identities = 473/742 (64%), Gaps = 2/742 (0%)
Strand=Plus/Minus
Query 517973 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 518032
||| | |||| ||||||||||| || | ||| | | || || | || || |||
Sbjct 8535 TCTTTCTTATGCTTTCTCTTGAATTCGTTAACGAAGTGGTTAACGAGTCTGTTGTCGAAA 8476
Query 518033 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 518092
|| ||||| ||||| | ||||| |||| || | | |||| || | || || ||
Sbjct 8475 TCCTCACCACCCAAGTGAGTATCACCTGCAGTGGACTTGACTTCAAAGATACCCTCCTCG 8416
Query 518093 AGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 518152
| | ||| || | ||||| ||||| ||||| | |||||| || || |||||
Sbjct 8415 ATGGTCAAGAGTGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACATTTCGC 8356
Query 518153 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 518212
|| || || || || ||||| || |||| || || || || || || |||||
Sbjct 8355 TCACCCTCAACCTTCTTGTCCAGACCGTAGGCAATGGCGGCCGCGGTAGGCTCGTTAATG 8296
Query 518213 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 518272
|| | | ||| || || ||||| || || ||||| || |||||||| | |||||||
Sbjct 8295 ATACGGAGAACGTTGAGGCCAGCGATCAGACCGGCATCCTTGGTGGCTTGACGTTGTGAA 8236
Query 518273 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCG 518332
||| | || ||||| || || || | ||||| | | || | ||||| |||||
Sbjct 8235 TCGGTGAAGTATGCTGGGACTGTGACGACGGCGTTGTTGACGGTTCCACCAAGGTAAGCC 8176
Query 518333 CTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGC 518392
|| || | | |||| || || ||||| || || |||| ||||| | |||||
Sbjct 8175 TCGGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATTTCCTCTGGTGTGAATTGC 8116
Query 518393 TTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTT 518451
|| ||| |||| | | || | | | || || |||| | | || |
Sbjct 8115 TTCTTCTCACCCTTGAACTCAATCTCGACGACA-GGCTTTCCACCACGGTCGAGGACGGT 8057
Query 518452 AAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAA 518511
|| || ||| |||||||| | || || ||||| || | || || || |
Sbjct 8056 GAAAGGGAAGTGCTTCATATCGGCCTGGACCTCCTGGTCTGCGAACTTTCGTCCGATCAG 7997
Query 518512 TCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATC 518571
|| ||||| || || | || |||| || || || || | || | || || |||||
Sbjct 7996 ACGCTTTGCGTCGAAGACTGTGTTGGCGGGGTTCATGGCGACCTGGTTCTTTGCGGCATC 7937
Query 518572 TCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTG 518631
||| |||||| | || || ||||| || | ||| | || || || || || || || ||
Sbjct 7936 TCCGATCAGACGCTCGGTATCTGTGAAGGCAACGAAGGAAGGGGTAGTTCGGTTTCCCTG 7877
Query 518632 ATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGT 518691
|| || || ||||| |||| | | ||| | | | ||||||||| | || ||
Sbjct 7876 GTCGTTGGCGATAATCTCAATTCGATCATCACGGTAGATACCTACACAGGAGTAGGTGGT 7817
Query 518692 TCCTAAATCAATACCAATAGCA 518713
||| | ||| ||||| || |||
Sbjct 7816 TCCAAGATCGATACCTATGGCA 7795
>seq281
Length=21818
Score = 107 bits (118), Expect = 1e-17
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227
|| ||||| ||||| |||| |||||||||||||| || || | | ||||| ||| |||
Sbjct 9564 TTCTCAAGTCCATATGCAAGCGCAGCAGCAGTTGGCTCGTTGACCACTCTCAGAACGTTA 9623
Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287
||||| |||||| || ||||| || |||||||| | |||||||||||| || || ||
Sbjct 9624 AGACCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTAAGCT 9683
Query 518288 GGAACAGTAATAACGGC 518304
|| || || | ||| ||
Sbjct 9684 GGGACTGTGACAACAGC 9700
>seq4876
Length=3815
Score = 104 bits (114), Expect = 2e-16
Identities = 254/383 (66%), Gaps = 3/383 (1%)
Strand=Plus/Minus
Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318
|||| || || | ||| || |||||||| | ||| || || || || ||||| |||||
Sbjct 614 GCAGAGACGTTCATAATTCCGTTGGCATCAACATCGAAGGTAACCTCGATTTGTGGGACA 555
Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378
|| | | ||||||||||| || | | ||| | |||| | || || || ||
Sbjct 554 CCACGTGGTGCAGGTGGGATACCAGTAAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTG 495
Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438
||| || || ||||||||||| | ||||||| || ||| ||| || || || |
Sbjct 494 GTGCGTTGACGCTCACCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAG 435
Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498
|| | || || ||| || || || || || |||||||| |||| ||||||
Sbjct 434 GTGGAGAAGACCTCGGACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATAAGCTTGGTC 375
Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558
|| |||||| || || || | ||| ||||| | || | |||||| | |||| ||
Sbjct 374 ATTTGACCACCAGCAGTCTCGATACCGAGAGACAATGGCGCGACATCGAGGAGGAGGATC 315
Query 517559 T--TTTGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615
| || | | || | | || | || ||||| || || || | ||||||||
Sbjct 314 TCGTTGGTGGACTTGGAAGAGGTGTCTCCGGAGAGAATGGCAGCCTGGACGGCAGCACCG 255
Query 517616 TATGCAACAGCTTCATCAGGATT 517638
|| ||||||||||||||||| ||
Sbjct 254 TAGGCAACAGCTTCATCAGGGTT 232
>seq637
Length=16155
Score = 87.8 bits (96), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 671660 GAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACT 671719
|| ||||||||||| | ||||| |||||||||||| | || | || || | || |||
Sbjct 4645 GAGTTTTTCTTCCACGCCATGGCTGGTCGTGAAGGTCTCATCGACACTGCAGTAAAGACT 4704
Query 671720 GCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATCAAACAAGAA 671779
|| || ||||||||||||||| | ||||| ||| || |||||| ||| ||
Sbjct 4705 GCCGAAACTGGTTATATTCAACGTCGTCTTGTCAAAGCACTTGAAGATGTCATTGCCAAA 4764
Query 671780 TATGATGGTACAGTAAGAAAT 671800
|||||||| ||||| |||||
Sbjct 4765 TATGATGGAACAGTCCGAAAT 4785
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780338622506794
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |