Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2057 315 9e-81 seq2868 181 1e-40 seq1315 125 9e-24 seq4876 111 2e-19 seq136 82.4 1e-10 >seq2057 Length=8825 Score = 315 bits (348), Expect = 9e-81 Identities = 519/746 (70%), Gaps = 6/746 (1%) Strand=Plus/Minus Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462 ||||||||||| || | || || || | | |||||| || |||||| |||||| Sbjct 8535 TCTTTCTTATGCTTTCTCTTGAATTCGTTAACGAAGTGGTTAACGAGTCTGTTGTCGAAA 8476 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || |||||||||||||| ||||| || || || | ||||||||||||||||| | || Sbjct 8475 TCCTCACCACCCAAGTGAGTATCACCTGCAGTGGACTTGACTTCAAAGATACCCTCCTCG 8416 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | || | || ||||| || || || ||||| || ||||| ||||| || || Sbjct 8415 ATGGTCAAGAGTGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACATTTCGC 8356 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 || | || ||||| || |||||||| || || || ||||| || || || ||||| Sbjct 8355 TCACCCTCAACCTTCTTGTCCAGACCGTAGGCAATGGCGGCCGCGGTAGGCTCGTTAATG 8296 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||| ||| ||| |||||||| || | ||||| || || ||||| ||||| ||| Sbjct 8295 ATACGGAGAACGTTGAGGCCAGCGATCAGACCGGCATCCTTGGTGGCTTGACGTTGTGAA 8236 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||| | ||||| || ||||| || ||||| |||| |||| | ||| || || | Sbjct 8235 TCGGTGAAGTATGCTGGGACTGTGACGACGGCGTTGTTGACGGTTCCACCAAGGTAAGCC 8176 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | ||| |||| ||| | | ||| || || || || || | | || || Sbjct 8175 TCGGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATTTCCTCTGGTGTGAATTGC 8116 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882 ||| | ||||| || || |||| || | | || || || || ||| | || || Sbjct 8115 TTCTTCTCACCCTTGAACTCAATCTCGACGACAGGCTT-TC--CACCACGGTCGAGGACG 8059 Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATA 7942 | | | | | ||||||||| | ||||||| ||||| | ||||||| |||||| Sbjct 8058 GTGAAAGGGAAGTGCTTCATATCGGCCTGGACCTCCTGGTCTGCGAACTTTCGTCCGATC 7999 Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002 ||||||||||| || || |||||||| |||||||||||| |||||||| || || Sbjct 7998 AGACGCTTTGCGTCGAAGACTGTGTTGGCGGGGTTCATGGCGACCTGGTTCTTTGCGGCA 7939 Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTC 8062 || ||||| ||||| || || || || || || ||| | || ||||| ||||| || Sbjct 7938 TCTCCGATCAGACGCTCGGTA---TCTGTGAAGGCAACGAAGGAAGGGGTAGTTCGGTTT 7882 Query 8063 CCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATAC 8122 || |||||||| || ||||| || | || || | | ||| || || || || || Sbjct 7881 CCCTGGTCGTTGGCGATAATCTCAATTCGATCATCACGGTAGATACCTACACAGGAGTAG 7822 Query 8123 GTTGTTCCTAAATCAATACCGATTGC 8148 || ||||| | ||| ||||| || || Sbjct 7821 GTGGTTCCAAGATCGATACCTATGGC 7796 >seq2868 Length=6797 Score = 181 bits (200), Expect = 1e-40 Identities = 352/514 (68%), Gaps = 13/514 (3%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| || | | ||| || | || ||| | || |||||| Sbjct 2557 TCCTCGAAACGAGCACGGGTGATTTGAGCGTTGAAGTCCTCTCCATCGAACAAGGAATCA 2616 Query 7307 ATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 || |||| || ||||| || ||| | ||| | |||| ||| || ||||| || || | Sbjct 2617 ATCTCAACAGTGGTTTGAGCACCGTTGGAGAGA--GTTCTCTTAGCACGCTCGCAAGCAG 2674 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424 | || | ||| ||||| ||||| | | |||||| | ||| ||||| || | | | | Sbjct 2675 TACGAAGACGTCGAAGAGCACGGGCATCACCGGACAAATCCTTCTTGGTCTTTCTTGTGA 2734 Query 7425 ACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 |||| | |||||| |||| ||| | | ||||||||||| ||| ||||| || ||| Sbjct 2735 ACTCCTTCTTGAAGTGGTCGAGCAAGT-TGGTATCGAAATCTTGACCTCCCAAATGGGTA 2793 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || || || || ||||| || | |||||| | ||||| | | || ||||| Sbjct 2794 TCACCAGCAGTGGCCTTGACGGTGAAAACACCTCCCTGGATGTTAAGGAGGGAGACATCG 2853 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT---- 7599 || || || ||||| || || | || | || || | | | | || | | || Sbjct 2854 AAAGTTCCTCCACCGAGATCGTAGATCAAGACATT--TCGCTCCTTGTTGGATTTTCCGG 2911 Query 7600 -ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | |||||||||| |||||||| || || ||||| || || || || || ||| ||| | Sbjct 2912 CACCGAGACCGTATGCGATAGCAGCGGCAGTTGGCTCGTTGATGATTCGGAGAACGTTAA 2971 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 | || ||||| | | ||||| || || ||||| ||||| ||||| |||||||| | Sbjct 2972 GACCGGCAATGGCACCAGCATCCTTGGTGGCTTGACGTTGGTTGTCGTTGAAGTAGGCTG 3031 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 |||| || | ||| || | | ||| ||||| || Sbjct 3032 GGACAGTGATGACTGCCTTGGCGACCTTCTTGCC 3065 >seq1315 Length=11532 Score = 125 bits (138), Expect = 9e-24 Identities = 355/545 (65%), Gaps = 9/545 (2%) Strand=Plus/Plus Query 105454 CCTTCAGATTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGA 105513 || ||||| ||||||||||| || | | | || ||||| | |||||| ||||| | | Sbjct 535 CCCTCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAG 594 Query 105514 CCCTTTGCCTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATG 105573 || || | ||| || | ||||| ||| | | |||||| || |||||| Sbjct 595 CCAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATG 654 Query 105574 AACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCT 105633 || | |||||||||||| | || | ||||| || || | |||| || | || Sbjct 655 AAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCG 714 Query 105634 TGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACT 105693 || ||| || | ||||| || |||| || ||| ||||||||||| || | || | Sbjct 715 TGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATG 774 Query 105694 GCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTA 105747 || | || || | ||||| || |||||| ||||||| ||||| ||| Sbjct 775 GCGAAAGCACC---AGGACGCTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTG 831 Query 105748 TACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGAT 105807 | ||||| | ||| |||| || || | ||| |||| ||||| ||| ||| | | Sbjct 832 AAAACTCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCA 891 Query 105808 TTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGC 105867 ||||||| | |||||| | | |||||||| ||||| ||| || Sbjct 892 CCGGTTGCACGGATTCTGTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATG 951 Query 105868 GCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGG 105927 ||||| || | ||| || || ||||| || || || || ||||| | | || ||| Sbjct 952 GCACAAATCTTCAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGG 1011 Query 105928 AAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGA 105987 || || ||||| | ||||| | |||||||||||| ||| || ||||||| || || Sbjct 1012 AAGCATGATGAAAGTTGTGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGG 1071 Query 105988 ATGAA 105992 |||| Sbjct 1072 GTGAA 1076 >seq4876 Length=3815 Score = 111 bits (122), Expect = 2e-19 Identities = 385/600 (64%), Gaps = 17/600 (3%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||| | || ||||| || || || | ||| |||||||| || || || Sbjct 734 TCATCCTCAGCCTTGTACTTCTCGGCCTCAGCCAACATGCGCTCAATGTCCTCCTTGGAC 675 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 || | ||||| || || || || |||||| | ||| || || | |||| || | Sbjct 674 AAACGTCCCTTGTCGTTGGTGATGACAATCTTGTTGGACTTTCCGGTTCCCTTCTCGAGA 615 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || |||| ||| || || |||||||||||||| | || | |||||||| | Sbjct 614 GCAGAGACGTTCATAATTCCGTTGGCATCAACATCGAAGGTAACCTCGATTTGTGGGACA 555 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | ||||| | ||| ||||| || | || ||| |||| | | |||| ||| | Sbjct 554 CCACGTGGTGCAGGTGGGATACCAGTAAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTG 495 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | ||| ||||| || |||||| || ||| ||||||| || || Sbjct 494 GTGCGTTGACGCTCACCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAG 435 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | ||| || || || ||||| || |||| | |||| Sbjct 434 GTGGAGAAGACCTCGGACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATAAGCTTGGTC 375 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA-- 6986 || |||||| ||| |||| || ||||||| || | || || | ||| | | Sbjct 374 ATTTGACCACCAGCAGTCTCGATACCGAGAGACAATGGCGCGACATCGAGGAGGAGGATC 315 Query 6987 --------GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGT 7038 || |||| | ||| || || || | | ||||| || ||||| | Sbjct 314 TCGTTGGTGGACTTGGA-AGA--GGT----GTCTCCGGAGAGAATGGCAGCCTGGACGGC 262 Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098 || ||||| || || || ||||| ||||| || | || || | || || ||||| || Sbjct 261 AGCACCGTAGGCAACAGCTTCATCAGGGTTGATGGACTTGTTTGGCTCCTTTCCGTTGAA 202 Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158 ||||| | | | | ||| ||| | ||||| || || || || ||||| | ||||| Sbjct 201 GTAATCGGTAATGAGCTTTTGGATTCTTGGGATACGAGTGGAACCTCCGACGAGCACGAT 142 >seq136 Length=27106 Score = 82.4 bits (90), Expect = 1e-10 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 11448 CTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAA 11507 ||| ||||| ||||| |||||||| || ||||||||||| || ||| | | |||| Sbjct 21237 CTTTCCAATGGCATCGATTTCATCAATGAAGATAATACAAGGGGTATTCTTTCTGGCCAT 21296 Query 11508 TTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATG- 11566 |||| | ||| || ||||| || || || || |||||||| || || ||| | Sbjct 21297 AGCAAAGAGATCTCGAACTCTGGAGGCACCAACACCAACAAACATCTCCACAAACTCGGA 21356 Query 11567 ACCCCGAACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTG 11626 ||| | |||||||| ||||| || ||||| || ||| | || ||||| | | Sbjct 21357 ACCACTGACACTGAA-GAAAGGTACACCTGATTCTCCAGCTGTGGCCTTTGCTAGTAAAG 21415 Query 11627 TTTTACCTGTACCTGGTTTACCTGTTAATAAT-GCACCCCTTGGTATTTTAGCACC 11681 | ||||| ||||| ||| ||| | || ||| || || | || || |||||||| Sbjct 21416 TCTTACCAGTACCAGGTGGACCAG-AAAGAATGGCTCCTCGAGGAATCTTAGCACC 21470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635055401129160