Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2057 315 9e-81
seq2868 181 1e-40
seq1315 125 9e-24
seq4876 111 2e-19
seq136 82.4 1e-10
>seq2057
Length=8825
Score = 315 bits (348), Expect = 9e-81
Identities = 519/746 (70%), Gaps = 6/746 (1%)
Strand=Plus/Minus
Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462
||||||||||| || | || || || | | |||||| || |||||| ||||||
Sbjct 8535 TCTTTCTTATGCTTTCTCTTGAATTCGTTAACGAAGTGGTTAACGAGTCTGTTGTCGAAA 8476
Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522
|| |||||||||||||| ||||| || || || | ||||||||||||||||| | ||
Sbjct 8475 TCCTCACCACCCAAGTGAGTATCACCTGCAGTGGACTTGACTTCAAAGATACCCTCCTCG 8416
Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582
||| | || | || ||||| || || || ||||| || ||||| ||||| || ||
Sbjct 8415 ATGGTCAAGAGTGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACATTTCGC 8356
Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642
|| | || ||||| || |||||||| || || || ||||| || || || |||||
Sbjct 8355 TCACCCTCAACCTTCTTGTCCAGACCGTAGGCAATGGCGGCCGCGGTAGGCTCGTTAATG 8296
Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702
||||| ||| ||| |||||||| || | ||||| || || ||||| ||||| |||
Sbjct 8295 ATACGGAGAACGTTGAGGCCAGCGATCAGACCGGCATCCTTGGTGGCTTGACGTTGTGAA 8236
Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762
||| | ||||| || ||||| || ||||| |||| |||| | ||| || || |
Sbjct 8235 TCGGTGAAGTATGCTGGGACTGTGACGACGGCGTTGTTGACGGTTCCACCAAGGTAAGCC 8176
Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822
|| || | ||| |||| ||| | | ||| || || || || || | | || ||
Sbjct 8175 TCGGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATTTCCTCTGGTGTGAATTGC 8116
Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882
||| | ||||| || || |||| || | | || || || || ||| | || ||
Sbjct 8115 TTCTTCTCACCCTTGAACTCAATCTCGACGACAGGCTT-TC--CACCACGGTCGAGGACG 8059
Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATA 7942
| | | | | ||||||||| | ||||||| ||||| | ||||||| ||||||
Sbjct 8058 GTGAAAGGGAAGTGCTTCATATCGGCCTGGACCTCCTGGTCTGCGAACTTTCGTCCGATC 7999
Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002
||||||||||| || || |||||||| |||||||||||| |||||||| || ||
Sbjct 7998 AGACGCTTTGCGTCGAAGACTGTGTTGGCGGGGTTCATGGCGACCTGGTTCTTTGCGGCA 7939
Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTC 8062
|| ||||| ||||| || || || || || || ||| | || ||||| ||||| ||
Sbjct 7938 TCTCCGATCAGACGCTCGGTA---TCTGTGAAGGCAACGAAGGAAGGGGTAGTTCGGTTT 7882
Query 8063 CCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATAC 8122
|| |||||||| || ||||| || | || || | | ||| || || || || ||
Sbjct 7881 CCCTGGTCGTTGGCGATAATCTCAATTCGATCATCACGGTAGATACCTACACAGGAGTAG 7822
Query 8123 GTTGTTCCTAAATCAATACCGATTGC 8148
|| ||||| | ||| ||||| || ||
Sbjct 7821 GTGGTTCCAAGATCGATACCTATGGC 7796
>seq2868
Length=6797
Score = 181 bits (200), Expect = 1e-40
Identities = 352/514 (68%), Gaps = 13/514 (3%)
Strand=Plus/Plus
Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306
||||| ||||| |||||||| || | | ||| || | || ||| | || ||||||
Sbjct 2557 TCCTCGAAACGAGCACGGGTGATTTGAGCGTTGAAGTCCTCTCCATCGAACAAGGAATCA 2616
Query 7307 ATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364
|| |||| || ||||| || ||| | ||| | |||| ||| || ||||| || || |
Sbjct 2617 ATCTCAACAGTGGTTTGAGCACCGTTGGAGAGA--GTTCTCTTAGCACGCTCGCAAGCAG 2674
Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424
| || | ||| ||||| ||||| | | |||||| | ||| ||||| || | | | |
Sbjct 2675 TACGAAGACGTCGAAGAGCACGGGCATCACCGGACAAATCCTTCTTGGTCTTTCTTGTGA 2734
Query 7425 ACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483
|||| | |||||| |||| ||| | | ||||||||||| ||| ||||| || |||
Sbjct 2735 ACTCCTTCTTGAAGTGGTCGAGCAAGT-TGGTATCGAAATCTTGACCTCCCAAATGGGTA 2793
Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543
|| || || || || ||||| || | |||||| | ||||| | | || |||||
Sbjct 2794 TCACCAGCAGTGGCCTTGACGGTGAAAACACCTCCCTGGATGTTAAGGAGGGAGACATCG 2853
Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT---- 7599
|| || || ||||| || || | || | || || | | | | || | | ||
Sbjct 2854 AAAGTTCCTCCACCGAGATCGTAGATCAAGACATT--TCGCTCCTTGTTGGATTTTCCGG 2911
Query 7600 -ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658
| |||||||||| |||||||| || || ||||| || || || || || ||| ||| |
Sbjct 2912 CACCGAGACCGTATGCGATAGCAGCGGCAGTTGGCTCGTTGATGATTCGGAGAACGTTAA 2971
Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718
| || ||||| | | ||||| || || ||||| ||||| ||||| |||||||| |
Sbjct 2972 GACCGGCAATGGCACCAGCATCCTTGGTGGCTTGACGTTGGTTGTCGTTGAAGTAGGCTG 3031
Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752
|||| || | ||| || | | ||| ||||| ||
Sbjct 3032 GGACAGTGATGACTGCCTTGGCGACCTTCTTGCC 3065
>seq1315
Length=11532
Score = 125 bits (138), Expect = 9e-24
Identities = 355/545 (65%), Gaps = 9/545 (2%)
Strand=Plus/Plus
Query 105454 CCTTCAGATTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGA 105513
|| ||||| ||||||||||| || | | | || ||||| | |||||| ||||| | |
Sbjct 535 CCCTCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAG 594
Query 105514 CCCTTTGCCTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATG 105573
|| || | ||| || | ||||| ||| | | |||||| || ||||||
Sbjct 595 CCAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATG 654
Query 105574 AACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCT 105633
|| | |||||||||||| | || | ||||| || || | |||| || | ||
Sbjct 655 AAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCG 714
Query 105634 TGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACT 105693
|| ||| || | ||||| || |||| || ||| ||||||||||| || | || |
Sbjct 715 TGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATG 774
Query 105694 GCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTA 105747
|| | || || | ||||| || |||||| ||||||| ||||| |||
Sbjct 775 GCGAAAGCACC---AGGACGCTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTG 831
Query 105748 TACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGAT 105807
| ||||| | ||| |||| || || | ||| |||| ||||| ||| ||| | |
Sbjct 832 AAAACTCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCA 891
Query 105808 TTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGC 105867
||||||| | |||||| | | |||||||| ||||| ||| ||
Sbjct 892 CCGGTTGCACGGATTCTGTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATG 951
Query 105868 GCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGG 105927
||||| || | ||| || || ||||| || || || || ||||| | | || |||
Sbjct 952 GCACAAATCTTCAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGG 1011
Query 105928 AAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGA 105987
|| || ||||| | ||||| | |||||||||||| ||| || ||||||| || ||
Sbjct 1012 AAGCATGATGAAAGTTGTGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGG 1071
Query 105988 ATGAA 105992
||||
Sbjct 1072 GTGAA 1076
>seq4876
Length=3815
Score = 111 bits (122), Expect = 2e-19
Identities = 385/600 (64%), Gaps = 17/600 (3%)
Strand=Plus/Minus
Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628
||||| ||| | || ||||| || || || | ||| |||||||| || || ||
Sbjct 734 TCATCCTCAGCCTTGTACTTCTCGGCCTCAGCCAACATGCGCTCAATGTCCTCCTTGGAC 675
Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688
|| | ||||| || || || || |||||| | ||| || || | |||| || |
Sbjct 674 AAACGTCCCTTGTCGTTGGTGATGACAATCTTGTTGGACTTTCCGGTTCCCTTCTCGAGA 615
Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748
||| || |||| ||| || || |||||||||||||| | || | |||||||| |
Sbjct 614 GCAGAGACGTTCATAATTCCGTTGGCATCAACATCGAAGGTAACCTCGATTTGTGGGACA 555
Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808
|| | ||||| | ||| ||||| || | || ||| |||| | | |||| ||| |
Sbjct 554 CCACGTGGTGCAGGTGGGATACCAGTAAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTG 495
Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868
| | ||| ||||| || |||||| || ||| ||||||| || ||
Sbjct 494 GTGCGTTGACGCTCACCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAG 435
Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928
|| ||||||| | ||||| | ||| || || || ||||| || |||| | ||||
Sbjct 434 GTGGAGAAGACCTCGGACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATAAGCTTGGTC 375
Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA-- 6986
|| |||||| ||| |||| || ||||||| || | || || | ||| | |
Sbjct 374 ATTTGACCACCAGCAGTCTCGATACCGAGAGACAATGGCGCGACATCGAGGAGGAGGATC 315
Query 6987 --------GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGT 7038
|| |||| | ||| || || || | | ||||| || ||||| |
Sbjct 314 TCGTTGGTGGACTTGGA-AGA--GGT----GTCTCCGGAGAGAATGGCAGCCTGGACGGC 262
Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098
|| ||||| || || || ||||| ||||| || | || || | || || ||||| ||
Sbjct 261 AGCACCGTAGGCAACAGCTTCATCAGGGTTGATGGACTTGTTTGGCTCCTTTCCGTTGAA 202
Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158
||||| | | | | ||| ||| | ||||| || || || || ||||| | |||||
Sbjct 201 GTAATCGGTAATGAGCTTTTGGATTCTTGGGATACGAGTGGAACCTCCGACGAGCACGAT 142
>seq136
Length=27106
Score = 82.4 bits (90), Expect = 1e-10
Identities = 163/236 (69%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 11448 CTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAA 11507
||| ||||| ||||| |||||||| || ||||||||||| || ||| | | ||||
Sbjct 21237 CTTTCCAATGGCATCGATTTCATCAATGAAGATAATACAAGGGGTATTCTTTCTGGCCAT 21296
Query 11508 TTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATG- 11566
|||| | ||| || ||||| || || || || |||||||| || || ||| |
Sbjct 21297 AGCAAAGAGATCTCGAACTCTGGAGGCACCAACACCAACAAACATCTCCACAAACTCGGA 21356
Query 11567 ACCCCGAACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTG 11626
||| | |||||||| ||||| || ||||| || ||| | || ||||| | |
Sbjct 21357 ACCACTGACACTGAA-GAAAGGTACACCTGATTCTCCAGCTGTGGCCTTTGCTAGTAAAG 21415
Query 11627 TTTTACCTGTACCTGGTTTACCTGTTAATAAT-GCACCCCTTGGTATTTTAGCACC 11681
| ||||| ||||| ||| ||| | || ||| || || | || || ||||||||
Sbjct 21416 TCTTACCAGTACCAGGTGGACCAG-AAAGAATGGCTCCTCGAGGAATCTTAGCACC 21470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635055401129160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |