Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1315 223 4e-53 seq2965 122 1e-22 seq136 98.7 1e-15 seq2230 82.4 9e-11 >seq1315 Length=11532 Score = 223 bits (246), Expect = 4e-53 Identities = 689/1054 (65%), Gaps = 39/1054 (4%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| | ||| | ||||| ||||| |||| ||||| || || |||||||| ||| Sbjct 1169 CCACAACATATGATTATGCGTGTCGCTGTCGGAATCCACGGTGAGGATATTGAGGCTGCC 1110 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || ||||||| | |||| |||||| ||||||| || ||| Sbjct 1109 ATCGAGACCTACAACTTGATGTCCAGCAAATACTTCACCCACGCCTCACCAACACTTTTC 1050 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 |||||||||||| | | ||| | || || |||||||| | | |||||||| Sbjct 1049 GCTGCTGGTACACCACAAGCACAACTTTCATCATGCTTCCTTATCGACATGAAGGAGGAC 990 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAA----TGTGCCCAAATCTCAAAGTGGGC 111847 || |||| || || | ||| | |||| |||||| || |||||| || Sbjct 989 AGCATTGATGGTATCTATGACAC----ATTGAAGATTTGTGCCATGATTTCAAAGAACGC 934 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTAGAGGTA 111906 ||||||||| || | | | || || | || ||| || || ||| |||| Sbjct 933 TGGTGGTATTGGTCTCAATGTTCACAGAATCCGTGC-AACCGGTGCTTACATTGCTGGTA 875 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 |||| || | || | || || |||| |||||||| || || ||| ||| || || | Sbjct 874 CAAACGGAAACTCCAACGGAATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCCCGAT 815 Query 111967 ATGTAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAGCCAT 112020 |||| | |||| ||| | |||| || || |||| | || |||||||||| Sbjct 814 ATGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCTTTCGCCATTTACCTTGAGCCAT 758 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||||| ||| | | |||||||| || | || ||||| || | ||||||| | Sbjct 757 GGCACGCTGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTTC 698 Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | ||| |||||||||| ||||||||||||||||||||||||||||||| | ||||| Sbjct 697 GTGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAA 638 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGG 112200 ||| | | ||| | | | || || || || || || | |||| | | | Sbjct 637 AGAACCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGCTTGGCCGACGTCTACG 578 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG-CG--- 112256 |||| ||||| || || | || || |||||| || |||| | | || Sbjct 577 GTGACGAGTTCGAGGCTTTGTATGAGAAATACGAGTCTGA-----GGGCAAGGGTCGTAA 523 Query 112257 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 | | | || | | | | ||| | |||| ||| || ||||||| ||||| || | Sbjct 522 AAGCATCAAGGCCCAAAAGCTTTGGTACTCTATCCTCGAGGCTCAAACTGAGACCGGAAA 463 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 || | ||||||||||| || || || |||| |||||| || ||||||||| | ||| Sbjct 462 CCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTTGGTAC 403 Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGAGACG 112433 ||| ||| |||||| | ||||| || || | ||| ||| | || |||||| Sbjct 402 CATCCGGAGCTCCAACTTGTGTACTGAGATTGTCGAA--TACTGTGCACCTGATGAGGTT 345 Query 112434 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA 112493 ||||| || ||| | ||||| | |||||||| | ||||| ||| |||| || Sbjct 344 GCTGTTTGCAACTTGGCATCGCTTGCTCTCCCAACATATGTTGATGAGAAGACTGCCACT 285 Query 112494 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTT 112553 | ||| | | || || |||||||| || |||| |||||| | |||| | Sbjct 284 TATGACTTCCAGAAGCTTCACGAAGTCTGCCAAGTTGTCGTCAAAAACTTGAACAAGATC 225 Query 112554 ATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGT 112610 || ||| || | ||||| || |||| || | || ||| | | ||| | Sbjct 224 ATCGATGTCAACTACTACCCAGTTCCTGAG---GCAAGAAAGAGCAATTTCCGTCACAGA 168 Query 112611 CCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATG 112644 || |||| |||||| ||||||||||| || |||| Sbjct 167 CCTATTGCTCTCGGCGTCCAAGGTCTTGCTGATG 134 >seq2965 Length=6591 Score = 122 bits (134), Expect = 1e-22 Identities = 157/214 (73%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTC 102166 |||||| || || | ||||| || ||||||||| | ||| | | |||| |||| Sbjct 5788 AGTTCCTTGCATCAAGAAGAAGGCCGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTC 5847 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | |||||||| | || ||| | || ||||| |||||||||||||||||| ||| Sbjct 5848 ---TACCTTTGCTCAACGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGG 5904 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 ||| ||| | || | ||| | |||||||| || |||||| | ||||| |||||| Sbjct 5905 TTCTTTCGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTC 5964 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||||| | ||||| ||||||||||| |||||| Sbjct 5965 CAACGAGTTGATCTCCCGTGACGAGGGTCTCCAC 5998 >seq136 Length=27106 Score = 98.7 bits (108), Expect = 1e-15 Identities = 221/332 (67%), Gaps = 30/332 (9%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 |||||||||||||| || | || || || | ||| ||| || ||||||||| | Sbjct 21151 AAACCATCCATCTCGGTTAGAATTTGATTGAGAGTAGCTTCTCGCTCATCATTCCC---- 21206 Query 16035 ATACCACCA---GCACTG---------CGTTGCTTTCCCACGGCATCAATCTCATCAATG 16082 ||||||| | || | || |||||| | |||||| || ||||||||| Sbjct 21207 --ACCACCAAATGAACCGGCCTTTCCACGAGCCTTTCCAATGGCATCGATTTCATCAATG 21264 Query 16083 AAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCG 16142 |||| || || || ||| | | || | |||||||||| || || | ||| Sbjct 21265 AAGATAATACAAGGGGTATTCTTTCTGGCCATAGCAAAGAGATCTCGAACTCTGGAGGCA 21324 Query 16143 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA-CATTG-----GATGAAGGGG 16196 || ||||||||||||||||||||||| | ||||| || || || ||| || Sbjct 21325 CCAACACCAACAAACATCTCCACAAACT------CGGAACCACTGACACTGAAGAAAGGT 21378 Query 16197 ACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCC 16256 ||| ||||| || || |||| || || | ||||||||| ||||| || ||| Sbjct 21379 ACACCTGATTCTCCAGCTGTGGCCTTTGCTAGTAAAGTCTTACCAGTACCAGGTGGACCA 21438 Query 16257 GCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 | || | ||| ||||| |||||||| || || Sbjct 21439 GAAAGAATGGCTCCTCGAGGAATCTTAGCACC 21470 >seq2230 Length=8342 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 163607 GGTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCATGGAGAC 163666 ||||| |||||| |||||||| ||| ||||||||||| | |||||||| || || || Sbjct 8342 GGTGTAATTGATGCCGACTACCGCGGTCAAGTCAAAGTCCTCCTCTTCAACCACGGTGAG 8283 Query 163667 AAAGACTTTGAGGTAAAGAGGGGGGAGCGCATCGCACAACTTGTTCTT-GAGAGGTGTGA 163725 ||||| || ||||| ||| ||| || || | || ||| ||| |||| ||||| | Sbjct 8282 AAAGATTTCGAGGTCAAGGAGGGAGATCGTGTAGCTCAA-TTGGTCTTGGAGAGAATCTA 8224 Query 163726 GACACCCGATGT 163737 |||||||| || Sbjct 8223 TACACCCGAGGT 8212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620666754779280