Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1315 154 2e-32 seq5294 98.7 1e-15 >seq1315 Length=11532 Score = 154 bits (170), Expect = 2e-32 Identities = 617/958 (64%), Gaps = 29/958 (3%) Strand=Plus/Plus Query 110260 GTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCG 110319 |||| || || |||||| | |||||||||| || || | ||||| |||| | ||| Sbjct 292 GTCTTCTCATCAACATATGTTGGGAGAGCAAGCGATGCCAAGTTGCAAACAGCAACCTCA 351 Query 110320 TCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAG 110379 || | |||||| | ||| || |||||||||||||| ||| ||| ||| | Sbjct 352 TCAGGTGCACAGTATTCGACAATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGA 411 Query 110380 TTCTTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGT 110438 ||||| || || | ||| | |||||| |||||||| || |||||| | ||| | || || Sbjct 412 TTCTTTTGGTTGCTCTTTCG-GTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGT 470 Query 110439 TTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGC 110498 || || || | || ||| || | | ||| | | ||| || ||| || | Sbjct 471 CTCAGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGA----TGCTTTTAC 526 Query 110499 GAGACCTT--CCTC---CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACA 110553 || |||| |||| |||||| || ||||| |||| || || | ||||| || Sbjct 527 GAC-CCTTGCCCTCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACG 585 Query 110554 TCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACC 110613 || | | || || || || || | | | ||| | || ||||| Sbjct 586 TCGGCCAAGCCAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACA 645 Query 110614 CTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCT 110673 | ||||||||| || || |||||||| | || |||| || |||||| |||| |||| Sbjct 646 CGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCC 705 Query 110674 TCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCG 110733 || | || ||||| || || || | || || | | ||| | ||||||||| || Sbjct 706 TCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCA 765 Query 110734 AGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCT 110787 || || | |||| | || | |||| ||| | || | |||||| || || Sbjct 766 AGGTAAATGGCGAAAGCACC---AGGACGCTTGTTACCACCTTGATCAACATATCGGGCG 822 Query 110788 GTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTA 110847 ||| ||||| || | |||||||||| ||||| | ||| | || |||||||| | Sbjct 823 GTGTTGTTGAAAACTCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCA 882 Query 110848 AT-TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTT 110906 || | | || ||| |||| || ||| | || | |||||||||||| || ||| Sbjct 883 ATGTAAGCACCGGTTG-CACGGATTCTGTGAACATTGAGACCAATACCACCAGCGTTCTT 941 Query 110907 ACTAATTTGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGT 110965 ||| ||||| ||| | | ||| |||| ||||||||||| || |||| Sbjct 942 TGAAATCATGGCACAAATCT-TCAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCA 1000 Query 110966 TGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAG 111025 || | || || ||||| || || | || | | || || || ||| ||| ||||| | Sbjct 1001 TGTCGATAAGGAAGCATGATGAAAGTTGTGCTTGTGGTGTACCAGCAGCGAAAAGTGTTG 1060 Query 111026 GTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGG 111083 ||| || || ||| || ||| ||||||| |||||| || |||| || | Sbjct 1061 GTGAGGCGTGGGTGA--AGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTC 1118 Query 111084 TACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGAT 111143 | ||| | |||||| || || | || || ||||| | ||||| ||| || |||| Sbjct 1119 AATATCCTCACCGTGGATTCCGACAGCGACACGCATAATCATATGTTGTGGACGTTCGCA 1178 Query 111144 TAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTAT 111201 | ||| ||||| | ||| | || || ||| |||||||||| ||| |||||| Sbjct 1179 GATCTTGCCATCGAGACGGAGGAGATATGATCGCTCAAGGGTCTTGAAACCGAAGTAT 1236 >seq5294 Length=3402 Score = 98.7 bits (108), Expect = 1e-15 Identities = 239/359 (67%), Gaps = 10/359 (3%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556 |||||| || ||||| || || || ||| |||||| ||||| ||||| | | ||| | Sbjct 516 GTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAACAATGGT 457 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 || | | | |||||||| ||||||||||| | | |||||||||| | || |||| Sbjct 456 ACGTTGTGAG---ATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGATGTT 400 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCA 109676 | ||||| || || |||||| | | || | | |||||| | | ||||| Sbjct 399 TGGAACATTTTGGATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTATCGGACCA 340 Query 109677 GAGACCGACCTTTTTGAGATCGTCAACAAG--ATGCTTGTTGACCACGACAAATTCACCA 109734 ||| || | | ||||| | | ||| ||| |||||| || || || ||| Sbjct 339 GAGTCCCATATCAACAAGATCCTTGAGAAGCCATG--GGTTGACAACTTGGAACTCTCCA 282 Query 109735 GCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCT 109794 ||||| || || ||||||||| | ||||| || ||||| ||||| ||| || Sbjct 281 GCAAGAACACGCCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAATCCA 222 Query 109795 AGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 ||||| || ||| || || ||||| ||||| | || | |||||| |||| ||| Sbjct 221 AGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACC 163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588904225912200