Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 291 1e-73
seq136 127 2e-24
seq2230 84.2 3e-11
>seq1315
Length=11532
Score = 291 bits (322), Expect = 1e-73
Identities = 743/1116 (67%), Gaps = 31/1116 (3%)
Strand=Plus/Plus
Query 106278 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 106337
|||| || |||||||| || || | | ||||||||||||| || | ||| ||||| |
Sbjct 134 CATCAGCAAGACCTTGGACGCCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTG 193
Query 106338 CAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 106394
| |||| || || || | || || |||| ||| | |||||| ||||
Sbjct 194 C---CTCAGGAACTGGGTAGTAGTTGACATCGATGATCTTGTTCAAGTTTTTGACGACAA 250
Query 106395 TCTTTGT-GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATAC 106453
||| | || ||| ||||| || | | ||| ||||| ||||| |||| |||||
Sbjct 251 -CTTGGCAGACTTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATAT 309
Query 106454 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 106513
|||| || || | |||||||| ||||||||||| |||||| | ||| ||
Sbjct 310 GTTGGGAGAGCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCG 369
Query 106514 AAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTT 106573
| ||| || |||||||||||||| ||| || || || | |||||||||||| ||||||
Sbjct 370 ACAATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTT 429
Query 106574 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGA 106633
|||||| ||||||||||| |||||| | || | || ||||| || || | || |||
Sbjct 430 CGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGG 489
Query 106634 ATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGT-CCCTCCGCCTC 106689
|| | | ||| | | | | | || | ||| || | ||| | ||||| | |||
Sbjct 490 ATAGAGTACCAAAGCTTTTGGGCCTTG----ATGCTTTTACGACCCTTGCCCTCAGACTC 545
Query 106690 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 106749
||| || || | || || ||||| ||||| |||||| | || || ||
Sbjct 546 GTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTC 605
Query 106750 GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809
|| || || | | | ||| | || ||||| ||||||||||| || |||||
Sbjct 606 GTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGG 665
Query 106810 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 106869
|||||| || | | |||||||| | ||| |||| || | || ||||| |||
Sbjct 666 AATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCG 725
Query 106870 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC 106929
| || |||||||| | | ||| ||||||||||||||||| || | |||| || ||
Sbjct 726 GAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACC 785
Query 106930 CTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 106983
||||| ||| |||||| ||||| || || ||| ||| || || |||||
Sbjct 786 ---AGGACGCTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAG 842
Query 106984 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 107043
||| |||| || || | || | || ||||| || ||| || | || |
Sbjct 843 CATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACG 902
Query 107044 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 107103
| || | | | |||||||| ||||| |||||| || ||||| | |
Sbjct 903 GATTCTGTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTT 962
Query 107104 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 107163
| || |||||||||| | || ||||||||| || ||||||||||||| ||
Sbjct 963 CAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGA 1022
Query 107164 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 107223
| || | | ||||||||||||| ||| || ||||||| ||||| |||| ||
Sbjct 1023 AAGTTGTGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAA-GTA-T 1080
Query 107224 TTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 107281
||| ||||||| || ||| ||||| | | ||| ||||| || || |||||||| |||
Sbjct 1081 TTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTCCG 1140
Query 107282 ATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA 107341
| || |||||||||| ||| | ||| || ||| || |||||||||| || |
Sbjct 1141 ACAGCGACACGCATAATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGACGGAGG 1200
Query 107342 AGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376
||||| | || ||||||||| |||| ||| |||||
Sbjct 1201 AGATATGATC-GCTCAAGGGTCTTGAAACCGAAGTA 1235
>seq136
Length=27106
Score = 127 bits (140), Expect = 2e-24
Identities = 249/366 (68%), Gaps = 34/366 (9%)
Strand=Plus/Plus
Query 9250 CGGCGATGACAACAATACCTGTTT--CATTATCAAAACCATCCATCTCTGTCAAAAGTTG 9307
|||| | ||| |||| |||| | || ||| |||||||||||||| || | || |||
Sbjct 21119 CGGCAAGGACCACAA--CCTGCTCAGCAGTATTGAAACCATCCATCTCGGTTAGAATTTG 21176
Query 9308 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA---GCACTG-------- 9356
|| | ||| ||| || ||||||||| | ||||||| | || |
Sbjct 21177 ATTGAGAGTAGCTTCTCGCTCATCATTCCC------ACCACCAAATGAACCGGCCTTTCC 21230
Query 9357 -CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG 9415
|| |||||| | |||||| || ||||||||||||| |||||| || ||| | |
Sbjct 21231 ACGAGCCTTTCCAATGGCATCGATTTCATCAATGAAGATAATACAAGGGGTATTCTTTCT 21290
Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475
||| || |||||||||| ||||| || ||| || |||||||||||||||||||||||
Sbjct 21291 GGCCATAGCAAAGAGATCTCGAACTCTGGAGGCACCAACACCAACAAACATCTCCACAAA 21350
Query 9476 GTTTGCGGCGGAA-CATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 9529
| ||||| || || || ||| || ||| ||||| || || ||||
Sbjct 21351 CT------CGGAACCACTGACACTGAAGAAAGGTACACCTGATTCTCCAGCTGTGGCCTT 21404
Query 9530 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTT 9589
|| || | ||||||||| ||||| || ||| | || | ||| || || ||||||||
Sbjct 21405 TGCTAGTAAAGTCTTACCAGTACCAGGTGGACCAGAAAGAATGGCTCCTCGAGGAATCTT 21464
Query 9590 GGCGCC 9595
|| ||
Sbjct 21465 AGCACC 21470
>seq2230
Length=8342
Score = 84.2 bits (92), Expect = 3e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 155104 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 155163
||||| |||||| ||||||| ||| ||||||||||| | |||||||| ||||| ||
Sbjct 8342 GGTGTAATTGATGCCGACTACCGCGGTCAAGTCAAAGTCCTCCTCTTCAACCACGGTGAG 8283
Query 155164 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAG 155214
||||| || ||||| ||| | || ||||| | || ||| | ||| | |||
Sbjct 8282 AAAGATTTCGAGGTCAAGGAGGGAGATCGTGTAGCTCAATTGGTCTTGGAG 8232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589908903464760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |