Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1315 291 1e-73 seq136 127 2e-24 seq2230 84.2 3e-11 >seq1315 Length=11532 Score = 291 bits (322), Expect = 1e-73 Identities = 743/1116 (67%), Gaps = 31/1116 (3%) Strand=Plus/Plus Query 106278 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 106337 |||| || |||||||| || || | | ||||||||||||| || | ||| ||||| | Sbjct 134 CATCAGCAAGACCTTGGACGCCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTG 193 Query 106338 CAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 106394 | |||| || || || | || || |||| ||| | |||||| |||| Sbjct 194 C---CTCAGGAACTGGGTAGTAGTTGACATCGATGATCTTGTTCAAGTTTTTGACGACAA 250 Query 106395 TCTTTGT-GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATAC 106453 ||| | || ||| ||||| || | | ||| ||||| ||||| |||| ||||| Sbjct 251 -CTTGGCAGACTTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATAT 309 Query 106454 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 106513 |||| || || | |||||||| ||||||||||| |||||| | ||| || Sbjct 310 GTTGGGAGAGCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCG 369 Query 106514 AAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTT 106573 | ||| || |||||||||||||| ||| || || || | |||||||||||| |||||| Sbjct 370 ACAATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTT 429 Query 106574 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGA 106633 |||||| ||||||||||| |||||| | || | || ||||| || || | || ||| Sbjct 430 CGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGG 489 Query 106634 ATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGT-CCCTCCGCCTC 106689 || | | ||| | | | | | || | ||| || | ||| | ||||| | ||| Sbjct 490 ATAGAGTACCAAAGCTTTTGGGCCTTG----ATGCTTTTACGACCCTTGCCCTCAGACTC 545 Query 106690 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 106749 ||| || || | || || ||||| ||||| |||||| | || || || Sbjct 546 GTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTC 605 Query 106750 GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 || || || | | | ||| | || ||||| ||||||||||| || ||||| Sbjct 606 GTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGG 665 Query 106810 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 106869 |||||| || | | |||||||| | ||| |||| || | || ||||| ||| Sbjct 666 AATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCG 725 Query 106870 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC 106929 | || |||||||| | | ||| ||||||||||||||||| || | |||| || || Sbjct 726 GAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACC 785 Query 106930 CTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 106983 ||||| ||| |||||| ||||| || || ||| ||| || || ||||| Sbjct 786 ---AGGACGCTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAG 842 Query 106984 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 107043 ||| |||| || || | || | || ||||| || ||| || | || | Sbjct 843 CATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACG 902 Query 107044 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 107103 | || | | | |||||||| ||||| |||||| || ||||| | | Sbjct 903 GATTCTGTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTT 962 Query 107104 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 107163 | || |||||||||| | || ||||||||| || ||||||||||||| || Sbjct 963 CAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGA 1022 Query 107164 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 107223 | || | | ||||||||||||| ||| || ||||||| ||||| |||| || Sbjct 1023 AAGTTGTGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAA-GTA-T 1080 Query 107224 TTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 107281 ||| ||||||| || ||| ||||| | | ||| ||||| || || |||||||| ||| Sbjct 1081 TTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTCCG 1140 Query 107282 ATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA 107341 | || |||||||||| ||| | ||| || ||| || |||||||||| || | Sbjct 1141 ACAGCGACACGCATAATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGACGGAGG 1200 Query 107342 AGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 ||||| | || ||||||||| |||| ||| ||||| Sbjct 1201 AGATATGATC-GCTCAAGGGTCTTGAAACCGAAGTA 1235 >seq136 Length=27106 Score = 127 bits (140), Expect = 2e-24 Identities = 249/366 (68%), Gaps = 34/366 (9%) Strand=Plus/Plus Query 9250 CGGCGATGACAACAATACCTGTTT--CATTATCAAAACCATCCATCTCTGTCAAAAGTTG 9307 |||| | ||| |||| |||| | || ||| |||||||||||||| || | || ||| Sbjct 21119 CGGCAAGGACCACAA--CCTGCTCAGCAGTATTGAAACCATCCATCTCGGTTAGAATTTG 21176 Query 9308 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA---GCACTG-------- 9356 || | ||| ||| || ||||||||| | ||||||| | || | Sbjct 21177 ATTGAGAGTAGCTTCTCGCTCATCATTCCC------ACCACCAAATGAACCGGCCTTTCC 21230 Query 9357 -CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG 9415 || |||||| | |||||| || ||||||||||||| |||||| || ||| | | Sbjct 21231 ACGAGCCTTTCCAATGGCATCGATTTCATCAATGAAGATAATACAAGGGGTATTCTTTCT 21290 Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||| || |||||||||| ||||| || ||| || ||||||||||||||||||||||| Sbjct 21291 GGCCATAGCAAAGAGATCTCGAACTCTGGAGGCACCAACACCAACAAACATCTCCACAAA 21350 Query 9476 GTTTGCGGCGGAA-CATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 9529 | ||||| || || || ||| || ||| ||||| || || |||| Sbjct 21351 CT------CGGAACCACTGACACTGAAGAAAGGTACACCTGATTCTCCAGCTGTGGCCTT 21404 Query 9530 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTT 9589 || || | ||||||||| ||||| || ||| | || | ||| || || |||||||| Sbjct 21405 TGCTAGTAAAGTCTTACCAGTACCAGGTGGACCAGAAAGAATGGCTCCTCGAGGAATCTT 21464 Query 9590 GGCGCC 9595 || || Sbjct 21465 AGCACC 21470 >seq2230 Length=8342 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 155104 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 155163 ||||| |||||| ||||||| ||| ||||||||||| | |||||||| ||||| || Sbjct 8342 GGTGTAATTGATGCCGACTACCGCGGTCAAGTCAAAGTCCTCCTCTTCAACCACGGTGAG 8283 Query 155164 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAG 155214 ||||| || ||||| ||| | || ||||| | || ||| | ||| | ||| Sbjct 8282 AAAGATTTCGAGGTCAAGGAGGGAGATCGTGTAGCTCAATTGGTCTTGGAG 8232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589908903464760