Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq1276 149 7e-31
seq285 127 2e-24
>seq1276
Length=11747
Score = 149 bits (164), Expect = 7e-31
Identities = 189/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827
||||| |||||| ||||| | |||||||| |||||||||||||| |||||||| |
Sbjct 369 CAAAGATTTGGTGTTCCTTTTGGATATGGTGGTCCTCATGCTGCTTTCTTTGCTGTCAGC 310
Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGT 153887
||||| |||||| | || || || || | | | || ||| ||| || ||
Sbjct 309 GACAAATATAAGCGGAAAATCCCAGGACGCCTCATCGGAGTTTCAAAAGACAGACTTGGA 250
Query 153888 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCA 153947
|||| || ||||| ||||| |||||| |||||||||||||| | ||||| || ||
Sbjct 249 GATAAGGCGATGAGATTGGCACTTCAGACTCGAGAGCAGCATATCCGAAGAGAGAAGGCT 190
Query 153948 ACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCA 154007
||||| || | |||||||| ||||||||||| || || ||| || |||||||| |
Sbjct 189 ACCAGCAATGTATGCACAGCACAGGCACTGCTTGCAAACATGAGTGCTTTCTATGCTGTG 130
Query 154008 TATCATGGTGCAGATGGACT 154027
||||| || |||| || ||
Sbjct 129 TATCACGGCCCAGAGGGTCT 110
>seq285
Length=21707
Score = 127 bits (140), Expect = 2e-24
Identities = 170/234 (73%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTA-GACAGATATG 154930
||||||||||| ||||||||||| ||| || |||||| | | | | | | | | ||
Sbjct 809 ATTATGATTACCTACCCATCTACCTTTGGCGTCTTTGAACCCGAGGTCAAGGCTGTT-TG 867
Query 154931 TAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACA 154990
|| | ||||| || |||| || ||||| || | ||||| || ||| | ||||| ||
Sbjct 868 CGAGTTGGTTCACGAACATGGAGGACAGGTTTACATGGATGGTGCGAATATGAATGCTCA 927
Query 154991 GGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAA 155050
| ||| | ||| ||||| ||| || ||||| |||||||| ||| | |||||
Sbjct 928 AATTGGATTGTGCTCACCTGGTGAGATTGGGGCTGATGTTTGTCATCTCAACCTTCATAA 987
Query 155051 AACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104
|||||||||||||| ||||| ||||| ||||| || || ||||| || |||||
Sbjct 988 GACATTCTGTATTCCTCATGGCGGTGGTGGTCCGGGTGTTGGTCCAATTGGTGT 1041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579142215680160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |