Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1276 149 7e-31 seq285 127 2e-24 >seq1276 Length=11747 Score = 149 bits (164), Expect = 7e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 ||||| |||||| ||||| | |||||||| |||||||||||||| |||||||| | Sbjct 369 CAAAGATTTGGTGTTCCTTTTGGATATGGTGGTCCTCATGCTGCTTTCTTTGCTGTCAGC 310 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGT 153887 ||||| |||||| | || || || || | | | || ||| ||| || || Sbjct 309 GACAAATATAAGCGGAAAATCCCAGGACGCCTCATCGGAGTTTCAAAAGACAGACTTGGA 250 Query 153888 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCA 153947 |||| || ||||| ||||| |||||| |||||||||||||| | ||||| || || Sbjct 249 GATAAGGCGATGAGATTGGCACTTCAGACTCGAGAGCAGCATATCCGAAGAGAGAAGGCT 190 Query 153948 ACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCA 154007 ||||| || | |||||||| ||||||||||| || || ||| || |||||||| | Sbjct 189 ACCAGCAATGTATGCACAGCACAGGCACTGCTTGCAAACATGAGTGCTTTCTATGCTGTG 130 Query 154008 TATCATGGTGCAGATGGACT 154027 ||||| || |||| || || Sbjct 129 TATCACGGCCCAGAGGGTCT 110 >seq285 Length=21707 Score = 127 bits (140), Expect = 2e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTA-GACAGATATG 154930 ||||||||||| ||||||||||| ||| || |||||| | | | | | | | | || Sbjct 809 ATTATGATTACCTACCCATCTACCTTTGGCGTCTTTGAACCCGAGGTCAAGGCTGTT-TG 867 Query 154931 TAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACA 154990 || | ||||| || |||| || ||||| || | ||||| || ||| | ||||| || Sbjct 868 CGAGTTGGTTCACGAACATGGAGGACAGGTTTACATGGATGGTGCGAATATGAATGCTCA 927 Query 154991 GGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAA 155050 | ||| | ||| ||||| ||| || ||||| |||||||| ||| | ||||| Sbjct 928 AATTGGATTGTGCTCACCTGGTGAGATTGGGGCTGATGTTTGTCATCTCAACCTTCATAA 987 Query 155051 AACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 |||||||||||||| ||||| ||||| ||||| || || ||||| || ||||| Sbjct 988 GACATTCTGTATTCCTCATGGCGGTGGTGGTCCGGGTGTTGGTCCAATTGGTGT 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579142215680160