Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq1276 150 2e-31
seq285 131 2e-25
>seq1276
Length=11747
Score = 150 bits (166), Expect = 2e-31
Identities = 202/281 (72%), Gaps = 0/281 (0%)
Strand=Plus/Minus
Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481
|||||||| | |||| ||||| |||||| ||||| | ||||| || |||||||||
Sbjct 390 GACATTGCATTTGGTAACGCCCAAAGATTTGGTGTTCCTTTTGGATATGGTGGTCCTCAT 331
Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 158541
||||| |||||||| | ||||| |||||| | || || || || | | | ||
Sbjct 330 GCTGCTTTCTTTGCTGTCAGCGACAAATATAAGCGGAAAATCCCAGGACGCCTCATCGGA 271
Query 158542 CAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 158601
||| ||| || || |||| || ||||| ||||| |||||| ||||||||
Sbjct 270 GTTTCAAAAGACAGACTTGGAGATAAGGCGATGAGATTGGCACTTCAGACTCGAGAGCAG 211
Query 158602 CATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAAT 158661
|||||| ||||||| || || ||||| || | ||||||||||| |||||||| || ||
Sbjct 210 CATATCCGAAGAGAGAAGGCTACCAGCAATGTATGCACAGCACAGGCACTGCTTGCAAAC 151
Query 158662 ATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGACT 158702
||| || |||||||| | ||||| || |||| || ||
Sbjct 150 ATGAGTGCTTTCTATGCTGTGTATCACGGCCCAGAGGGTCT 110
>seq285
Length=21707
Score = 131 bits (144), Expect = 2e-25
Identities = 171/234 (73%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCA-GACAGATATG 159605
||||||||||| || |||||||| ||| || |||||| | | ||| | | | | ||
Sbjct 809 ATTATGATTACCTACCCATCTACCTTTGGCGTCTTTGAACCCGAGGTCAAGGCTGTT-TG 867
Query 159606 TAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACA 159665
|| | ||||| || |||| || ||||| || | |||||||| ||| | ||||| ||
Sbjct 868 CGAGTTGGTTCACGAACATGGAGGACAGGTTTACATGGATGGTGCGAATATGAATGCTCA 927
Query 159666 GGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAA 159725
| || | ||| |||| ||| || ||||| |||||||| ||| | |||||
Sbjct 928 AATTGGATTGTGCTCACCTGGTGAGATTGGGGCTGATGTTTGTCATCTCAACCTTCATAA 987
Query 159726 GACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779
||||||||||||||| ||||| ||||| ||||| || || ||||| ||||||||
Sbjct 988 GACATTCTGTATTCCTCATGGCGGTGGTGGTCCGGGTGTTGGTCCAATTGGTGT 1041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587979538610640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |