Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1276 150 2e-31 seq285 131 2e-25 >seq1276 Length=11747 Score = 150 bits (166), Expect = 2e-31 Identities = 202/281 (72%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481 |||||||| | |||| ||||| |||||| ||||| | ||||| || ||||||||| Sbjct 390 GACATTGCATTTGGTAACGCCCAAAGATTTGGTGTTCCTTTTGGATATGGTGGTCCTCAT 331 Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 158541 ||||| |||||||| | ||||| |||||| | || || || || | | | || Sbjct 330 GCTGCTTTCTTTGCTGTCAGCGACAAATATAAGCGGAAAATCCCAGGACGCCTCATCGGA 271 Query 158542 CAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 158601 ||| ||| || || |||| || ||||| ||||| |||||| |||||||| Sbjct 270 GTTTCAAAAGACAGACTTGGAGATAAGGCGATGAGATTGGCACTTCAGACTCGAGAGCAG 211 Query 158602 CATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAAT 158661 |||||| ||||||| || || ||||| || | ||||||||||| |||||||| || || Sbjct 210 CATATCCGAAGAGAGAAGGCTACCAGCAATGTATGCACAGCACAGGCACTGCTTGCAAAC 151 Query 158662 ATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGACT 158702 ||| || |||||||| | ||||| || |||| || || Sbjct 150 ATGAGTGCTTTCTATGCTGTGTATCACGGCCCAGAGGGTCT 110 >seq285 Length=21707 Score = 131 bits (144), Expect = 2e-25 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCA-GACAGATATG 159605 ||||||||||| || |||||||| ||| || |||||| | | ||| | | | | || Sbjct 809 ATTATGATTACCTACCCATCTACCTTTGGCGTCTTTGAACCCGAGGTCAAGGCTGTT-TG 867 Query 159606 TAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACA 159665 || | ||||| || |||| || ||||| || | |||||||| ||| | ||||| || Sbjct 868 CGAGTTGGTTCACGAACATGGAGGACAGGTTTACATGGATGGTGCGAATATGAATGCTCA 927 Query 159666 GGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAA 159725 | || | ||| |||| ||| || ||||| |||||||| ||| | ||||| Sbjct 928 AATTGGATTGTGCTCACCTGGTGAGATTGGGGCTGATGTTTGTCATCTCAACCTTCATAA 987 Query 159726 GACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||||||||||| ||||| ||||| ||||| || || ||||| |||||||| Sbjct 988 GACATTCTGTATTCCTCATGGCGGTGGTGGTCCGGGTGTTGGTCCAATTGGTGT 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587979538610640