Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2057 122 7e-22 seq281 111 1e-18 seq4876 96.9 3e-14 seq2868 96.9 3e-14 seq279 89.7 4e-12 >seq2057 Length=8825 Score = 122 bits (134), Expect = 7e-22 Identities = 383/591 (65%), Gaps = 2/591 (0%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || |||||||| ||| | |||||||| || ||||| ||| | | | ||| | | Sbjct 7796 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATCTACCGTGATGATCGA 7855 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||| ||||| ||||| || || || ||| ||||||| || || | ||| | ||||| Sbjct 7856 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACTACCCCTTCCTTCGTTGCCTTCACA 7915 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | | || ||||| ||||| | || | | | || || |||| Sbjct 7916 GATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAGGTCGCCATGAACCCCGCCAAC 7975 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || || || || ||| | || ||| ||| || || | || ||||| Sbjct 7976 ACAGTCTTCGACGCAAAGCGTCTGATCGGACGAAAGTTCGCAGACCAGGAGGTCCAGGCC 8035 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||| | |||||| | | | | |||||| ||| | || | | Sbjct 8036 GATATGAAGCACTTCCCTTTCACCGTCCTCGACCGTGGTGGAAAGCCTGTCGTCGA-GAT 8094 Query 550292 ACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | |||| | | || ||||| ||||||| |||| || || ||| | || | Sbjct 8095 TGAGTTCAAGGGTGAGAAGAAGCAATTCACACCAGAGGAAATCTCTTCCATGATCTTGGT 8154 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 || |||| | | || ||| |||| ||||| | || | | || || | || Sbjct 8155 CAAGATGAGAGAGACTGCCGAGGCTTACCTTGGTGGAACCGTCAACAACGCCGTCGTCAC 8214 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 || |||||||| || | || |||||||||||||| || || ||||| || | || || Sbjct 8215 AGTCCCAGCATACTTCACCGATTCACAACGTCAAGCCACCAAGGATGCCGGTCTGATCGC 8274 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| || || ||||| ||||| || || || ||||| || || || |||| || || || Sbjct 8275 TGGCCTCAACGTTCTCCGTATCATTAACGAGCCTACCGCGGCCGCCATTGCCTACGGTCT 8334 Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || || | ||| || | ||||| |||||||||||| ||| || Sbjct 8335 GGACAAGAAGGTTGAGGGTGAGCGAAATGTTCTCATCTTTGATCTTGGTGG 8385 >seq281 Length=21818 Score = 111 bits (122), Expect = 1e-18 Identities = 111/143 (78%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || ||||| || || || || |||||||||||||| || || |||||||| | ||| Sbjct 9691 ACAGTCCCAGCTTACTTCAACGATTCACAACGTCAAGCCACCAAGGATGCTGGTCAAATT 9632 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || ||||| ||||| | | |||| || || ||||||||||| |||||||||||| Sbjct 9631 GCCGGTCTTAACGTTCTGAGAGTGGTCAACGAGCCAACTGCTGCTGCGCTTGCATATGGA 9572 Query 550529 CTTGATAAACATAATGATCAAGA 550551 ||||| || || | || ||||| Sbjct 9571 CTTGAGAAGGATGAGGA-CAAGA 9550 >seq4876 Length=3815 Score = 96.9 bits (106), Expect = 3e-14 Identities = 253/384 (66%), Gaps = 3/384 (1%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACA- 552268 || || ||||| ||||||||||| ||||| || | || || || ||||| || ||| | Sbjct 232 AACCCTGATGAAGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCCATTCTCTCCGGAGAC 291 Query 552269 AACTGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 | || | || | || || | || | || | ||||| | || | ||||| ||| Sbjct 292 ACCTCTTCCAAGTCCACCAACGAGATCCTCCTCCTCGATGTCGCGCCATTGTCTCTCGGT 351 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | || || | ||| ||| ||||| || |||||| ||||| || || || || Sbjct 352 ATCGAGACTGCTGGTGGTCAAATGACCAAGCTTATCCCAAGAAACACCACCATCCCAACC 411 Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 || || || || || || || | || || || ||| ||| ||| || ||| | Sbjct 412 AAGAAGTCCGAGGTCTTCTCCACCTTCTCCGACAACCAACCTGGTGTGCTTATCCAAGTC 471 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 || || || || | || ||| || || || || | | |||| || | | Sbjct 472 TTCGAGGGTGAGCGTCAACGCACCAAGGACAACAACCTTTTGGGTAAATTCGAGCTTACT 531 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 ||||| || ||||| || ||||| || || ||||| || ||||| |||||| | |||||| Sbjct 532 GGTATCCCACCTGCACCACGTGGTGTCCCACAAATCGAGGTTACCTTCGATGTTGATGCC 591 Query 552567 AATGGAATTTTGAATGTGACTGCT 552590 || |||||| |||| || ||||| Sbjct 592 AACGGAATTATGAACGTCTCTGCT 615 >seq2868 Length=6797 Score = 96.9 bits (106), Expect = 3e-14 Identities = 114/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 550379 GTTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| ||||||| | | | ||||| || ||||| ||||| || || || ||| || Sbjct 3069 GTTGGGCAAGAAGGTCGCCAAGGCAGTCATCACTGTCCCAGCCTACTTCAACGACAACCA 3010 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 ||||||||| || || |||||||| ||||| || ||||| ||||| || || ||||| Sbjct 3009 ACGTCAAGCCACCAAGGATGCTGGTGCCATTGCCGGTCTTAACGTTCTCCGAATCATCAA 2950 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 || || ||||| ||||| | ||||| || || Sbjct 2949 CGAGCCAACTGCCGCTGCTATCGCATACGGTCT 2917 >seq279 Length=21859 Score = 89.7 bits (98), Expect = 4e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 549987 AAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATG 550046 || ||| ||| ||||| |||||||||||||| || ||||| ||||| ||| |||| Sbjct 18489 AAATAGTTATCGGTATTGATTTAGGAACCACGTACTCGTGTGTGGGTGTGATGCAGAATG 18548 Query 550047 GTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTT 550106 | || || ||||| | | || || ||||| |||||| ||| ||||| ||||| | | Sbjct 18549 GAAAGGTCGAAATCCTCGTAAACGACCAAGGACACAGAATTACACCATCATATGTCGCAT 18608 Query 550107 TCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTA 550166 | || || ||| ||||| || || ||||| || | || || |||| || || | Sbjct 18609 TTACCGACGAGGAAAGATTAGTAGGAGACGCAGCCAAGAACCAGGCTGCTGGAAACCCAA 18668 Query 550167 CCAATACTATTTTTGAT 550183 || || || |||||| Sbjct 18669 AGAACACCATCTTTGAT 18685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028780428912010