Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq2057 122 7e-22
seq281 111 1e-18
seq4876 96.9 3e-14
seq2868 96.9 3e-14
seq279 89.7 4e-12
>seq2057
Length=8825
Score = 122 bits (134), Expect = 7e-22
Identities = 383/591 (65%), Gaps = 2/591 (0%)
Strand=Plus/Plus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
|| |||||||| ||| | |||||||| || ||||| ||| | | | ||| | |
Sbjct 7796 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATCTACCGTGATGATCGA 7855
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
|||| ||||| ||||| || || || ||| ||||||| || || | ||| | |||||
Sbjct 7856 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACTACCCCTTCCTTCGTTGCCTTCACA 7915
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| || || | | | | || ||||| ||||| | || | | | || || ||||
Sbjct 7916 GATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAGGTCGCCATGAACCCCGCCAAC 7975
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| | || || || || ||| | || ||| ||| || || | || |||||
Sbjct 7976 ACAGTCTTCGACGCAAAGCGTCTGATCGGACGAAAGTTCGCAGACCAGGAGGTCCAGGCC 8035
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291
||||||||||| | |||||| | | | | |||||| ||| | || | |
Sbjct 8036 GATATGAAGCACTTCCCTTTCACCGTCCTCGACCGTGGTGGAAAGCCTGTCGTCGA-GAT 8094
Query 550292 ACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350
| |||| | | || ||||| ||||||| |||| || || ||| | || |
Sbjct 8095 TGAGTTCAAGGGTGAGAAGAAGCAATTCACACCAGAGGAAATCTCTTCCATGATCTTGGT 8154
Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410
|| |||| | | || ||| |||| ||||| | || | | || || | ||
Sbjct 8155 CAAGATGAGAGAGACTGCCGAGGCTTACCTTGGTGGAACCGTCAACAACGCCGTCGTCAC 8214
Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470
|| |||||||| || | || |||||||||||||| || || ||||| || | || ||
Sbjct 8215 AGTCCCAGCATACTTCACCGATTCACAACGTCAAGCCACCAAGGATGCCGGTCTGATCGC 8274
Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530
||| || || ||||| ||||| || || || ||||| || || || |||| || || ||
Sbjct 8275 TGGCCTCAACGTTCTCCGTATCATTAACGAGCCTACCGCGGCCGCCATTGCCTACGGTCT 8334
Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581
|| || | ||| || | ||||| |||||||||||| ||| ||
Sbjct 8335 GGACAAGAAGGTTGAGGGTGAGCGAAATGTTCTCATCTTTGATCTTGGTGG 8385
>seq281
Length=21818
Score = 111 bits (122), Expect = 1e-18
Identities = 111/143 (78%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
|| || ||||| || || || || |||||||||||||| || || |||||||| | |||
Sbjct 9691 ACAGTCCCAGCTTACTTCAACGATTCACAACGTCAAGCCACCAAGGATGCTGGTCAAATT 9632
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
|| || ||||| ||||| | | |||| || || ||||||||||| ||||||||||||
Sbjct 9631 GCCGGTCTTAACGTTCTGAGAGTGGTCAACGAGCCAACTGCTGCTGCGCTTGCATATGGA 9572
Query 550529 CTTGATAAACATAATGATCAAGA 550551
||||| || || | || |||||
Sbjct 9571 CTTGAGAAGGATGAGGA-CAAGA 9550
>seq4876
Length=3815
Score = 96.9 bits (106), Expect = 3e-14
Identities = 253/384 (66%), Gaps = 3/384 (1%)
Strand=Plus/Plus
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACA- 552268
|| || ||||| ||||||||||| ||||| || | || || || ||||| || ||| |
Sbjct 232 AACCCTGATGAAGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCCATTCTCTCCGGAGAC 291
Query 552269 AACTGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326
| || | || | || || | || | || | ||||| | || | ||||| |||
Sbjct 292 ACCTCTTCCAAGTCCACCAACGAGATCCTCCTCCTCGATGTCGCGCCATTGTCTCTCGGT 351
Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386
| || || | ||| ||| ||||| || |||||| ||||| || || || ||
Sbjct 352 ATCGAGACTGCTGGTGGTCAAATGACCAAGCTTATCCCAAGAAACACCACCATCCCAACC 411
Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446
|| || || || || || || | || || || ||| ||| ||| || ||| |
Sbjct 412 AAGAAGTCCGAGGTCTTCTCCACCTTCTCCGACAACCAACCTGGTGTGCTTATCCAAGTC 471
Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506
|| || || || | || ||| || || || || | | |||| || | |
Sbjct 472 TTCGAGGGTGAGCGTCAACGCACCAAGGACAACAACCTTTTGGGTAAATTCGAGCTTACT 531
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
||||| || ||||| || ||||| || || ||||| || ||||| |||||| | ||||||
Sbjct 532 GGTATCCCACCTGCACCACGTGGTGTCCCACAAATCGAGGTTACCTTCGATGTTGATGCC 591
Query 552567 AATGGAATTTTGAATGTGACTGCT 552590
|| |||||| |||| || |||||
Sbjct 592 AACGGAATTATGAACGTCTCTGCT 615
>seq2868
Length=6797
Score = 96.9 bits (106), Expect = 3e-14
Identities = 114/153 (75%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 550379 GTTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437
||||| ||||||| | | | ||||| || ||||| ||||| || || || ||| ||
Sbjct 3069 GTTGGGCAAGAAGGTCGCCAAGGCAGTCATCACTGTCCCAGCCTACTTCAACGACAACCA 3010
Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497
||||||||| || || |||||||| ||||| || ||||| ||||| || || |||||
Sbjct 3009 ACGTCAAGCCACCAAGGATGCTGGTGCCATTGCCGGTCTTAACGTTCTCCGAATCATCAA 2950
Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACT 550530
|| || ||||| ||||| | ||||| || ||
Sbjct 2949 CGAGCCAACTGCCGCTGCTATCGCATACGGTCT 2917
>seq279
Length=21859
Score = 89.7 bits (98), Expect = 4e-12
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 549987 AAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATG 550046
|| ||| ||| ||||| |||||||||||||| || ||||| ||||| ||| ||||
Sbjct 18489 AAATAGTTATCGGTATTGATTTAGGAACCACGTACTCGTGTGTGGGTGTGATGCAGAATG 18548
Query 550047 GTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTT 550106
| || || ||||| | | || || ||||| |||||| ||| ||||| ||||| | |
Sbjct 18549 GAAAGGTCGAAATCCTCGTAAACGACCAAGGACACAGAATTACACCATCATATGTCGCAT 18608
Query 550107 TCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTA 550166
| || || ||| ||||| || || ||||| || | || || |||| || || |
Sbjct 18609 TTACCGACGAGGAAAGATTAGTAGGAGACGCAGCCAAGAACCAGGCTGCTGGAAACCCAA 18668
Query 550167 CCAATACTATTTTTGAT 550183
|| || || ||||||
Sbjct 18669 AGAACACCATCTTTGAT 18685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028780428912010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |