Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1973 125 6e-24 seq47 98.7 8e-16 >seq1973 Length=9094 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||||||||| || || || |||||||| |||| || || | | | || || Sbjct 6116 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCCTCG 6057 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || || || || | ||||||||||| || ||||| || || ||||| || Sbjct 6056 AGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGG 5997 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || ||| | || | ||||| || | ||| || || ||||||| || ||| Sbjct 5996 ATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTCGACCTCGAGAGTGATGGTCTTG 5937 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| || || || || ||||| Sbjct 5936 CCGGTAAGAGTCTTGACGAAGATTTGCAT 5908 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338 || ||||| || ||||| ||| || || | |||| ||||||||||| || || || Sbjct 6326 TCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCATCCTCCAATTGCTTGCCGGCGAAA 6267 Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 ||||| ||||||||||| || ||||| || || ||||| || || ||| || ||| | Sbjct 6266 ATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 6207 Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 || | ||||| || | || ||||| | || | || |||||||| | ||| || || Sbjct 6206 TCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAACG 6147 Query 101459 AATATCTGCAT 101469 || |||||||| Sbjct 6146 AAGATCTGCAT 6136 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || ||||||||||| || || || |||||||| |||| || || | | | Sbjct 5895 ACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCC 5836 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | |||||| || ||||| || | |||||||| || || || ||||| || || Sbjct 5835 GTCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGTCCGGTGGGATGCCCTCCTT 5776 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || ||||| || || ||| | || | || ||| | ||| ||||| ||||||| Sbjct 5775 GTCCTGAATCTTCGACTTGACATTGTCGATGGTATCACTGGATTCGACTTCGAGAGTGAT 5716 Query 101434 CGTTTTGCCGGTTAAAGTTTTTAC 101457 || ||||| || || || || || Sbjct 5715 GGTCTTGCCAGTCAAGGTCTTGAC 5692 >seq47 Length=33200 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 |||||| | || |||||| || | ||||||||| || || || || || ||||| || | Sbjct 24307 TCCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 24248 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | || | | || || | |||||| || || || ||||||||||||||||| || || Sbjct 24247 AAGGGTACGTCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTGG 24188 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||| || || || || ||||| || || ||| | || | ||||| || | || || Sbjct 24187 AATTCCCTCCTTGTCCTGAATCTTGGACTTAACATTATCGATGGTGTCCGAAGACTCAAC 24128 Query 101422 TTCAAGAGTGACCGTTTTGCCGGT 101445 || || |||| || ||||| || Sbjct 24127 CTCTAGGGTGATGGTCTTGCCCGT 24104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396231315810393