Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1973 118 8e-22 >seq1973 Length=9094 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | |||||||| |||||||| ||||| || || | ||| Sbjct 6353 AGGCGAAGCACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTGAGGGTACGA 6294 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| ||||| || |||| |||||||||||||| |||| |||||| Sbjct 6293 CCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAATACCCTCC 6234 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || ||| | | | | || || | ||| || |||| ||| Sbjct 6233 TTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTA 6174 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || || || |||||||| Sbjct 6173 ATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| || || |||||||| || || || | || |||| || Sbjct 6116 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCCTCG 6057 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| ||||| || || |||||||||||||||| |||| |||||||| || Sbjct 6056 AGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGG 5997 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || ||| | | | | ||||| | || ||||| | || || || || Sbjct 5996 ATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTCGACCTCGAGAGTGATGGTCTTG 5937 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| || || || || ||||| Sbjct 5936 CCGGTAAGAGTCTTGACGAAGATTTGCAT 5908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380892338541927