Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 123 5e-23
>seq2965
Length=6591
Score = 123 bits (136), Expect = 5e-23
Identities = 348/523 (67%), Gaps = 25/523 (5%)
Strand=Plus/Minus
Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899
||||| || | || | ||||| |||||||| ||||| || | | ||||||||||||
Sbjct 6300 TGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTCTCC 6241
Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCAG 47958
|||||| ||| ||||||| || || ||| | ||| || | || ||
Sbjct 6240 ATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTT-TCATTACCGAGAGAGAGGAGGAG 6182
Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018
|||| |||||| |||| ||||||| ||| | | || ||||||||| | || |
Sbjct 6181 CCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGAG- 6123
Query 48019 CACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077
||| | || ||||| || | ||||| | ||| |||| || || || | | |
Sbjct 6122 CACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGA-CG 6064
Query 48078 GCTTAACGCGGGACT-CTGAGGGTTTGTTGCGCAGGTGCTT------GGCATAGAGCATG 48130
|||| ||||| ||| || ||| || | ||||| || |||| | |
Sbjct 6063 GCTT------GGACTGCTGCC--TTACTTGGGC-GATGCTTCAAGTGGGAGAAGAGAAGG 6013
Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190
|| || ||||| |||| | || ||||| ||| ||| | | ||||||||||| |||
Sbjct 6012 CATGCGAAGTCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGA 5953
Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250
|||| ||||| || | || || | |||||| || | |||||||| ||| |||||||
Sbjct 5952 CCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAG 5893
Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310
|| ||||| || || || || || ||| | | | || | || | ||||||| |
Sbjct 5892 ATACCCTCAACGGCAGCAAAGGCAACGAGACGTTGAGCAAAGGTAGACTCCTTGTCTTGG 5833
Query 48311 ATCCA--GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
||||| ||| ||| ||| || ||||||||||||||||| ||
Sbjct 5832 ATCCATCGGACAGC--CCAATCGGCCTTCTTCTTGATGCAAGG 5792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931419281084160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |