Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2965 123 5e-23 >seq2965 Length=6591 Score = 123 bits (136), Expect = 5e-23 Identities = 348/523 (67%), Gaps = 25/523 (5%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || | || | ||||| |||||||| ||||| || | | |||||||||||| Sbjct 6300 TGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTCTCC 6241 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCAG 47958 |||||| ||| ||||||| || || ||| | ||| || | || || Sbjct 6240 ATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTT-TCATTACCGAGAGAGAGGAGGAG 6182 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 |||| |||||| |||| ||||||| ||| | | || ||||||||| | || | Sbjct 6181 CCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGAG- 6123 Query 48019 CACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | || ||||| || | ||||| | ||| |||| || || || | | | Sbjct 6122 CACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGA-CG 6064 Query 48078 GCTTAACGCGGGACT-CTGAGGGTTTGTTGCGCAGGTGCTT------GGCATAGAGCATG 48130 |||| ||||| ||| || ||| || | ||||| || |||| | | Sbjct 6063 GCTT------GGACTGCTGCC--TTACTTGGGC-GATGCTTCAAGTGGGAGAAGAGAAGG 6013 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || || ||||| |||| | || ||||| ||| ||| | | ||||||||||| ||| Sbjct 6012 CATGCGAAGTCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGA 5953 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||| ||||| || | || || | |||||| || | |||||||| ||| ||||||| Sbjct 5952 CCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAG 5893 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || ||||| || || || || || ||| | | | || | || | ||||||| | Sbjct 5892 ATACCCTCAACGGCAGCAAAGGCAACGAGACGTTGAGCAAAGGTAGACTCCTTGTCTTGG 5833 Query 48311 ATCCA--GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||| ||| ||| ||| || ||||||||||||||||| || Sbjct 5832 ATCCATCGGACAGC--CCAATCGGCCTTCTTCTTGATGCAAGG 5792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931419281084160