Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 161 2e-34
seq2965 118 2e-21
>seq1315
Length=11532
Score = 161 bits (178), Expect = 2e-34
Identities = 491/750 (65%), Gaps = 29/750 (4%)
Strand=Plus/Plus
Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818
||||| ||||| | |||| || | |||||| || || | || || || ||| ||
Sbjct 373 ATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGG 432
Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878
||| ||| |||||||| ||||| || || || ||||| |||||| | || ||
Sbjct 433 TTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATA 492
Query 221879 TTGTCCCAGAGTTCTCTGGCGCTCAC-------CGTCCTCTTGACTGCACCCTCGGTCTT 221931
|| ||| || | | ||| | | || || |||| | || |||| ||
Sbjct 493 GAGTACCAAAGCTTTTGGGCCTTGATGCTTTTACGACC-CTTGCCCTCAGACTCGTATTT 551
Query 221932 TTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACA 221991
|||||| | ||| | | |||| |||||||| | ||| ||| ||| |||||
Sbjct 552 CTCATAC-------AAAGCCT--CGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACA 602
Query 221992 CCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTC 222051
| | || ||||||| |||||| ||| | || || | || ||||||||| ||
Sbjct 603 CTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATC 662
Query 222052 CGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTT 222111
|| ||||| || || | |||||||| | || || ||||||| |||| ||| ||
Sbjct 663 TGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTT 722
Query 222112 CCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGC 222171
| || || | ||||| |||| ||||||||||| ||||| || || | ||| | |||
Sbjct 723 TCGGAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGC 782
Query 222172 GCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAA 222230
|| || |||||||| ||||| |||| || ||| | | | |||||| | ||||
Sbjct 783 ACCAGGACGCTTGTTACCACCTTGAT-CAACATATCGGGCGGTGTTGTTGAAAACTCGAA 841
Query 222231 GGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC 222290
| | || || | ||||||||| ||||| || || |||||| |||||| || |
Sbjct 842 GCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCAC 901
Query 222291 TCAGGTTACTGGCAGACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAG 222346
|| | ||| | |||| || |||||||| |||| || || |||||||| ||
Sbjct 902 ---GGATTCTGTGA-ACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAA 957
Query 222347 CTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAA 222406
|||| | ||||| ||| || || || ||||||||| | || | || || ||
Sbjct 958 ATCTTCAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAT 1017
Query 222407 GACGACATCTGAGATT-TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAA 222465
|| || | || | || ||||| | ||| | ||| || || || |||||| || ||
Sbjct 1018 GATGAAAGTTGTGCTTGTGGTGTACCAGCAGCGAAA-AGTGTTGGTGAGGCGTGGGTGAA 1076
Query 222466 GTAGCCCCTAGACATCAGATCGTACGTCTC 222495
||| || ||||||| | ||| |||||
Sbjct 1077 GTATTTGCTGGACATCAAGTTGTAGGTCTC 1106
>seq2965
Length=6591
Score = 118 bits (130), Expect = 2e-21
Identities = 172/240 (72%), Gaps = 5/240 (2%)
Strand=Plus/Plus
Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTT 25872
||||||||| |||||| ||||| | |||||| | || || | | |||| |||
Sbjct 5796 GCATCAAGAAGAAGGCCGATTGGGCTGTCCGATGGATCCA-AGACAAGGAGTCTACCTTT 5854
Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932
| | || || || ||||||||||| || ||||| ||||| ||||| ||||| || ||
Sbjct 5855 GCTCAACGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCA 5914
Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992
||||||||||| | ||| || || |||| | || || ||| ||||||||| |
Sbjct 5915 TCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTG 5974
Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052
||| | | |||||||||||||||| || || || ||||| |||| | | |||||||
Sbjct 5975 ATCTCCCGTGACGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTC---CCACTTG 6031
Score = 102 bits (112), Expect = 2e-16
Identities = 179/260 (69%), Gaps = 7/260 (3%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||||||||| || || ||||||||||||||||||||||||
Sbjct 5402 ATCTGGCAAATGTACAAGAAGGCCGAAGCTTCTTTCTGGACCGCCGAAGAGATTGATCTT 5461
Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591
||||||| | ||| |||| || |||| | | | ||||| | | || ||
Sbjct 5462 TCCAAGGATCTCCACGACTGGAACAACAAGCTCAA--CGATGACGAACGCTACTTCATCT 5519
Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651
|||| | || ||||| || ||||| || || || || |||||||| || ||||
Sbjct 5520 CCCACGTCCTCGCTTTCTTCGCTGCCTCCGACGGAATTGTCAACGAGAACCTCCTCGAGC 5579
Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711
| |||| ||| ||||| || | |||||| | |||||||||||||| || |
Sbjct 5580 GCTTCAGCAGTGAAGTCCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAATCATGA 5639
Query 25712 TCGAAAATGTGCACTCTGAG 25731
| || || | |||||||||
Sbjct 5640 TGGAGAACATCCACTCTGAG 5659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928731608650560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |