Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1315 161 2e-34 seq2965 118 2e-21 >seq1315 Length=11532 Score = 161 bits (178), Expect = 2e-34 Identities = 491/750 (65%), Gaps = 29/750 (4%) Strand=Plus/Plus Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818 ||||| ||||| | |||| || | |||||| || || | || || || ||| || Sbjct 373 ATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGG 432 Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||| ||| |||||||| ||||| || || || ||||| |||||| | || || Sbjct 433 TTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATA 492 Query 221879 TTGTCCCAGAGTTCTCTGGCGCTCAC-------CGTCCTCTTGACTGCACCCTCGGTCTT 221931 || ||| || | | ||| | | || || |||| | || |||| || Sbjct 493 GAGTACCAAAGCTTTTGGGCCTTGATGCTTTTACGACC-CTTGCCCTCAGACTCGTATTT 551 Query 221932 TTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACA 221991 |||||| | ||| | | |||| |||||||| | ||| ||| ||| ||||| Sbjct 552 CTCATAC-------AAAGCCT--CGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACA 602 Query 221992 CCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTC 222051 | | || ||||||| |||||| ||| | || || | || ||||||||| || Sbjct 603 CTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATC 662 Query 222052 CGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTT 222111 || ||||| || || | |||||||| | || || ||||||| |||| ||| || Sbjct 663 TGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTT 722 Query 222112 CCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGC 222171 | || || | ||||| |||| ||||||||||| ||||| || || | ||| | ||| Sbjct 723 TCGGAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGC 782 Query 222172 GCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAA 222230 || || |||||||| ||||| |||| || ||| | | | |||||| | |||| Sbjct 783 ACCAGGACGCTTGTTACCACCTTGAT-CAACATATCGGGCGGTGTTGTTGAAAACTCGAA 841 Query 222231 GGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC 222290 | | || || | ||||||||| ||||| || || |||||| |||||| || | Sbjct 842 GCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCAC 901 Query 222291 TCAGGTTACTGGCAGACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAG 222346 || | ||| | |||| || |||||||| |||| || || |||||||| || Sbjct 902 ---GGATTCTGTGA-ACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAA 957 Query 222347 CTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAA 222406 |||| | ||||| ||| || || || ||||||||| | || | || || || Sbjct 958 ATCTTCAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAT 1017 Query 222407 GACGACATCTGAGATT-TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAA 222465 || || | || | || ||||| | ||| | ||| || || || |||||| || || Sbjct 1018 GATGAAAGTTGTGCTTGTGGTGTACCAGCAGCGAAA-AGTGTTGGTGAGGCGTGGGTGAA 1076 Query 222466 GTAGCCCCTAGACATCAGATCGTACGTCTC 222495 ||| || ||||||| | ||| ||||| Sbjct 1077 GTATTTGCTGGACATCAAGTTGTAGGTCTC 1106 >seq2965 Length=6591 Score = 118 bits (130), Expect = 2e-21 Identities = 172/240 (72%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTT 25872 ||||||||| |||||| ||||| | |||||| | || || | | |||| ||| Sbjct 5796 GCATCAAGAAGAAGGCCGATTGGGCTGTCCGATGGATCCA-AGACAAGGAGTCTACCTTT 5854 Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 | | || || || ||||||||||| || ||||| ||||| ||||| ||||| || || Sbjct 5855 GCTCAACGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCA 5914 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||| | ||| || || |||| | || || ||| ||||||||| | Sbjct 5915 TCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTG 5974 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| | | |||||||||||||||| || || || ||||| |||| | | ||||||| Sbjct 5975 ATCTCCCGTGACGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTC---CCACTTG 6031 Score = 102 bits (112), Expect = 2e-16 Identities = 179/260 (69%), Gaps = 7/260 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| || || |||||||||||||||||||||||| Sbjct 5402 ATCTGGCAAATGTACAAGAAGGCCGAAGCTTCTTTCTGGACCGCCGAAGAGATTGATCTT 5461 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||||||| | ||| |||| || |||| | | | ||||| | | || || Sbjct 5462 TCCAAGGATCTCCACGACTGGAACAACAAGCTCAA--CGATGACGAACGCTACTTCATCT 5519 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| | || ||||| || ||||| || || || || |||||||| || |||| Sbjct 5520 CCCACGTCCTCGCTTTCTTCGCTGCCTCCGACGGAATTGTCAACGAGAACCTCCTCGAGC 5579 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| ||| ||||| || | |||||| | |||||||||||||| || | Sbjct 5580 GCTTCAGCAGTGAAGTCCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAATCATGA 5639 Query 25712 TCGAAAATGTGCACTCTGAG 25731 | || || | ||||||||| Sbjct 5640 TGGAGAACATCCACTCTGAG 5659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928731608650560