Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2057 102 5e-16 seq231 98.7 6e-15 seq1973 91.5 1e-12 seq281 86.0 4e-11 >seq2057 Length=8825 Score = 102 bits (112), Expect = 5e-16 Identities = 384/596 (64%), Gaps = 10/596 (2%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| || ||||| ||| | ||||| || ||| ||||||| | | | | ||| | Sbjct 7795 TGCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATCTACCGTGATGATCG 7854 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 | | || || || ||||| ||||| || || |||| || || || | ||| | || || Sbjct 7855 AATTGAGATTATCGCCAACGACCAGGGAAACCGAACTACCCCTTCCTTCGTTGCCTTCAC 7914 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || || || | ||| || |||||||| || || | || | || || || | || Sbjct 7915 AGATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAGGTCGCCATGAACCCCGCCAA 7974 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT--GTCCAA 474565 || | || || || || | |||| || || || || | || ||| ||||| Sbjct 7975 CACAGTCTTCGACGCAAAGCGTCTGATCGGACGAAAGTTCGCAGA--CCAGGAGGTCCAG 8032 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AG 474623 | |||||| || | ||||| | || | | |||||| || || | || Sbjct 8033 GCCGATATGAAGCACTTCCCTTTCACCGTCCTCGACCGTGGTGGAAAGCCTGTCGTCGAG 8092 Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | | | || | ||||| | || ||||| |||| || |||| ||||| ||| | | Sbjct 8093 ATTGAGTTCAAG--GGTGAGAAGAAGCAATTCACACCAGAGGAAATCTCTTCCATGATCT 8150 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742 | | ||| |||| | | || || ||| | || ||||| | || | | || || Sbjct 8151 TGGTCAAGATGAGAGAGACTGCCGAGG-CTTACCTTGGTGGAACCGTCAACAACGCCGTC 8209 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 | || || |||||||| || | ||||| ||||||||||| || || ||||| || Sbjct 8210 GTCACAGTCCCAGCATACTTCACCGATTCACAACGTCAAGCCACCAAGGATGCCGGTCTG 8269 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 || || || || || ||| | ||||| ||||| || || || || ||||| |||| || Sbjct 8270 ATCGCTGGCCTCAACGTTCTCCGTATCATTAACGAGCCTACCGCGGCCGCCATTGCCTAC 8329 Query 474863 GGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 ||||| || ||||| ||| || ||||||| | ||||||||| ||| || Sbjct 8330 GGTCTGGACAAGAAGGTTGAGGGTGAGCGAAATGTTCTCATCTTTGATCTTGGTGG 8385 >seq231 Length=23011 Score = 98.7 bits (108), Expect = 6e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || |||||||||||||| || || | ||| |||||||| || |||||||| ||||| Sbjct 15376 ATCCTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTGGAATTCCCTCCTT 15435 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 ||| || ||||| |||||| || ||||| || | | | | |||||||||| Sbjct 15436 GTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCCGAAGACTCGA-CCTCAAGGGTAA 15494 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAA 480763 | || ||||| ||||| ||||| ||||| Sbjct 15495 TGGTCTTACCCGTGAGGGTCTTGACGAA 15522 >seq1973 Length=9094 Score = 91.5 bits (100), Expect = 1e-12 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || | |||||| || || ||||| | || |||||||| || ||||| || ||||| Sbjct 6291 ATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAATACCCTCCTT 6232 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAAGGGTAA 480735 || || |||||| |||||| ||||| || || | | | || || ||| | ||| Sbjct 6231 ATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATG-TAA 6173 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || ||||| |||||||||||||| || || Sbjct 6172 TAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTG 6139 >seq281 Length=21818 Score = 86.0 bits (94), Expect = 4e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || ||||| || || || ||||| ||||||||||| || || ||||| || |||| Sbjct 9691 ACAGTCCCAGCTTACTTCAACGATTCACAACGTCAAGCCACCAAGGATGCTGGTCAAATT 9632 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || |||||||| ||| | | | | || || ||||| || || || ||||| ||||| Sbjct 9631 GCCGGTCTTAACGTTCTGAGAGTGGTCAACGAGCCAACTGCTGCTGCGCTTGCATATGGA 9572 Query 474866 CTTGATAAGAATTCTGACAA 474885 ||||| ||| || ||||| Sbjct 9571 CTTGAGAAGGATGAGGACAA 9552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267761018087852