Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq2057 102 5e-16
seq231 98.7 6e-15
seq1973 91.5 1e-12
seq281 86.0 4e-11
>seq2057
Length=8825
Score = 102 bits (112), Expect = 5e-16
Identities = 384/596 (64%), Gaps = 10/596 (2%)
Strand=Plus/Plus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
||| || ||||| ||| | ||||| || ||| ||||||| | | | | ||| |
Sbjct 7795 TGCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATCTACCGTGATGATCG 7854
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
| | || || || ||||| ||||| || || |||| || || || | ||| | || ||
Sbjct 7855 AATTGAGATTATCGCCAACGACCAGGGAAACCGAACTACCCCTTCCTTCGTTGCCTTCAC 7914
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507
|| || || | ||| || |||||||| || || | || | || || || | ||
Sbjct 7915 AGATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAGGTCGCCATGAACCCCGCCAA 7974
Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT--GTCCAA 474565
|| | || || || || | |||| || || || || | || ||| |||||
Sbjct 7975 CACAGTCTTCGACGCAAAGCGTCTGATCGGACGAAAGTTCGCAGA--CCAGGAGGTCCAG 8032
Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AG 474623
| |||||| || | ||||| | || | | |||||| || || | ||
Sbjct 8033 GCCGATATGAAGCACTTCCCTTTCACCGTCCTCGACCGTGGTGGAAAGCCTGTCGTCGAG 8092
Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683
| | | || | ||||| | || ||||| |||| || |||| ||||| ||| | |
Sbjct 8093 ATTGAGTTCAAG--GGTGAGAAGAAGCAATTCACACCAGAGGAAATCTCTTCCATGATCT 8150
Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742
| | ||| |||| | | || || ||| | || ||||| | || | | || ||
Sbjct 8151 TGGTCAAGATGAGAGAGACTGCCGAGG-CTTACCTTGGTGGAACCGTCAACAACGCCGTC 8209
Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802
| || || |||||||| || | ||||| ||||||||||| || || ||||| ||
Sbjct 8210 GTCACAGTCCCAGCATACTTCACCGATTCACAACGTCAAGCCACCAAGGATGCCGGTCTG 8269
Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862
|| || || || || ||| | ||||| ||||| || || || || ||||| |||| ||
Sbjct 8270 ATCGCTGGCCTCAACGTTCTCCGTATCATTAACGAGCCTACCGCGGCCGCCATTGCCTAC 8329
Query 474863 GGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918
||||| || ||||| ||| || ||||||| | ||||||||| ||| ||
Sbjct 8330 GGTCTGGACAAGAAGGTTGAGGGTGAGCGAAATGTTCTCATCTTTGATCTTGGTGG 8385
>seq231
Length=23011
Score = 98.7 bits (108), Expect = 6e-15
Identities = 112/148 (76%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| || |||||||||||||| || || | ||| |||||||| || |||||||| |||||
Sbjct 15376 ATCCTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTGGAATTCCCTCCTT 15435
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735
||| || ||||| |||||| || ||||| || | | | | ||||||||||
Sbjct 15436 GTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCCGAAGACTCGA-CCTCAAGGGTAA 15494
Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAA 480763
| || ||||| ||||| ||||| |||||
Sbjct 15495 TGGTCTTACCCGTGAGGGTCTTGACGAA 15522
>seq1973
Length=9094
Score = 91.5 bits (100), Expect = 1e-12
Identities = 114/154 (74%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| || | |||||| || || ||||| | || |||||||| || ||||| || |||||
Sbjct 6291 ATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAATACCCTCCTT 6232
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAAGGGTAA 480735
|| || |||||| |||||| ||||| || || | | | || || ||| | |||
Sbjct 6231 ATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATG-TAA 6173
Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||| || ||||| |||||||||||||| || ||
Sbjct 6172 TAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTG 6139
>seq281
Length=21818
Score = 86.0 bits (94), Expect = 4e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805
|| || ||||| || || || ||||| ||||||||||| || || ||||| || ||||
Sbjct 9691 ACAGTCCCAGCTTACTTCAACGATTCACAACGTCAAGCCACCAAGGATGCTGGTCAAATT 9632
Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865
|| |||||||| ||| | | | | || || ||||| || || || ||||| |||||
Sbjct 9631 GCCGGTCTTAACGTTCTGAGAGTGGTCAACGAGCCAACTGCTGCTGCGCTTGCATATGGA 9572
Query 474866 CTTGATAAGAATTCTGACAA 474885
||||| ||| || |||||
Sbjct 9571 CTTGAGAAGGATGAGGACAA 9552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267761018087852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |