Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1315 89.7 3e-13 >seq1315 Length=11532 Score = 89.7 bits (98), Expect = 3e-13 Identities = 239/363 (66%), Gaps = 2/363 (1%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 ||||| || ||| || | |||||||||||| | || || || | ||| | || | Sbjct 640 TCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGA 699 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 | || || |||||||| |||||| || || | ||| || |||| ||| | ||||||| Sbjct 700 ACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCAGCGTGCCAT 759 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 || || | || || || ||| ||| | || ||||||||||| || |||| Sbjct 760 GGCTCAAGGTAAATGGCGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCGG 819 Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTA 26161 || || | ||||||||| | ||| ||||| | ||| | || ||||||||| | | Sbjct 820 GCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCA 879 Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCAT 26221 ||| | | || || | | || |||| ||| | ||| || |||||||| Sbjct 880 GCAATGTAAGCACCGGTTGCACGGATTCTGTGAACATTGAGACCAATACCACCAGCGTTC 939 Query 26222 TTTGAAATAGCTGCAC-AATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280 |||||||| |||| ||||| || ||| || | || || | ||||| || | || Sbjct 940 TTTGAAATCATGGCACAAATCTTCAA-TGTGTCATAGATACCATCAATGCTGTCCTCCTT 998 Query 26281 CAT 26283 ||| Sbjct 999 CAT 1001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253009934815175