Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 89.7 3e-13
>seq1315
Length=11532
Score = 89.7 bits (98), Expect = 3e-13
Identities = 239/363 (66%), Gaps = 2/363 (1%)
Strand=Plus/Plus
Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981
||||| || ||| || | |||||||||||| | || || || | ||| | || |
Sbjct 640 TCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGA 699
Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041
| || || |||||||| |||||| || || | ||| || |||| ||| | |||||||
Sbjct 700 ACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCAGCGTGCCAT 759
Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101
|| || | || || || ||| ||| | || ||||||||||| || ||||
Sbjct 760 GGCTCAAGGTAAATGGCGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCGG 819
Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTA 26161
|| || | ||||||||| | ||| ||||| | ||| | || ||||||||| | |
Sbjct 820 GCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCA 879
Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCAT 26221
||| | | || || | | || |||| ||| | ||| || ||||||||
Sbjct 880 GCAATGTAAGCACCGGTTGCACGGATTCTGTGAACATTGAGACCAATACCACCAGCGTTC 939
Query 26222 TTTGAAATAGCTGCAC-AATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280
|||||||| |||| ||||| || ||| || | || || | ||||| || | ||
Sbjct 940 TTTGAAATCATGGCACAAATCTTCAA-TGTGTCATAGATACCATCAATGCTGTCCTCCTT 998
Query 26281 CAT 26283
|||
Sbjct 999 CAT 1001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253009934815175
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |