Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1276 136 5e-27 seq285 122 1e-22 >seq1276 Length=11747 Score = 136 bits (150), Expect = 5e-27 Identities = 186/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 139260 AGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGT 139319 || || |||| || ||||| | |||||||| || ||| ||||| |||||||| ||| Sbjct 110 AGACCCTCTGGGCCGTGATACACAGCATAGAAAGCACTCATGTTTGCAAGCAGTGCCTGT 169 Query 139320 GCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGT 139379 |||||||| | || ||||| || || ||||||| ||||||||||||| ||| || ||| Sbjct 170 GCTGTGCATACATTGCTGGTAGCCTTCTCTCTTCGGATATGCTGCTCTCGAGTCTGAAGT 229 Query 139380 GCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGT 139439 || ||||| || || || ||||| ||| || | | | || || Sbjct 230 GCCAATCTCATCGCCTTATCTCCAAGTCTGTCTTTTGAAACTCCGATGAGGCGTCCTGGG 289 Query 139440 ATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCC 139499 || || | |||||| ||||| | |||||||| |||||||||||||| || ||||| Sbjct 290 ATTTTCCGCTTATATTTGTCGCTGACAGCAAAGAAAGCAGCATGAGGACCACCATATCCA 349 Query 139500 ATAGGAATACCAAACCTTTG 139519 | ||||| |||||| ||||| Sbjct 350 AAAGGAACACCAAATCTTTG 369 >seq285 Length=21707 Score = 122 bits (134), Expect = 1e-22 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||| ||||| || || ||||| ||||| ||||| |||||||||||||||||||| Sbjct 1041 ACACCAATTGGACCAACACCCGGACCACCACCGCCATGAGGAATACAGAATGTCTTATGA 982 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || |||||||| ||||| || ||| |||| ||| | || | || ||| Sbjct 981 AGGTTGAGATGACAAACATCAGCCCCAATCTCACCAGGTGAGCACAATCCAATTTGAGCA 922 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | ||| |||||||| | || ||||| || |||| || ||||| | || || | | Sbjct 921 TTCATATTCGCACCATCCATGTAAACCTGTCCTCCATGTTCGTGAACCAACTCGCA-AAC 863 Query 138363 TGTC-TGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAAT 138415 | | ||| | | |||||| || ||| || ||||| || ||||||||||| Sbjct 862 AGCCTTGACCTCGGGTTCAAAGACGCCAAAGGTAGATGGGTAGGTAATCATAAT 809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578927841807480