Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq1276 136 5e-27
seq285 122 1e-22
>seq1276
Length=11747
Score = 136 bits (150), Expect = 5e-27
Identities = 186/260 (72%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 139260 AGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGT 139319
|| || |||| || ||||| | |||||||| || ||| ||||| |||||||| |||
Sbjct 110 AGACCCTCTGGGCCGTGATACACAGCATAGAAAGCACTCATGTTTGCAAGCAGTGCCTGT 169
Query 139320 GCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGT 139379
|||||||| | || ||||| || || ||||||| ||||||||||||| ||| || |||
Sbjct 170 GCTGTGCATACATTGCTGGTAGCCTTCTCTCTTCGGATATGCTGCTCTCGAGTCTGAAGT 229
Query 139380 GCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGT 139439
|| ||||| || || || ||||| ||| || | | | || ||
Sbjct 230 GCCAATCTCATCGCCTTATCTCCAAGTCTGTCTTTTGAAACTCCGATGAGGCGTCCTGGG 289
Query 139440 ATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCC 139499
|| || | |||||| ||||| | |||||||| |||||||||||||| || |||||
Sbjct 290 ATTTTCCGCTTATATTTGTCGCTGACAGCAAAGAAAGCAGCATGAGGACCACCATATCCA 349
Query 139500 ATAGGAATACCAAACCTTTG 139519
| ||||| |||||| |||||
Sbjct 350 AAAGGAACACCAAATCTTTG 369
>seq285
Length=21707
Score = 122 bits (134), Expect = 1e-22
Identities = 169/234 (72%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242
|||||||| ||||| || || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1041 ACACCAATTGGACCAACACCCGGACCACCACCGCCATGAGGAATACAGAATGTCTTATGA 982
Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302
| || |||||||| ||||| || ||| |||| ||| | || | || |||
Sbjct 981 AGGTTGAGATGACAAACATCAGCCCCAATCTCACCAGGTGAGCACAATCCAATTTGAGCA 922
Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362
|| | ||| |||||||| | || ||||| || |||| || ||||| | || || | |
Sbjct 921 TTCATATTCGCACCATCCATGTAAACCTGTCCTCCATGTTCGTGAACCAACTCGCA-AAC 863
Query 138363 TGTC-TGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAAT 138415
| | ||| | | |||||| || ||| || ||||| || |||||||||||
Sbjct 862 AGCCTTGACCTCGGGTTCAAAGACGCCAAAGGTAGATGGGTAGGTAATCATAAT 809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578927841807480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |