Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1315 233 2e-56 seq136 123 3e-23 seq5294 86.0 7e-12 seq2230 84.2 3e-11 >seq1315 Length=11532 Score = 233 bits (258), Expect = 2e-56 Identities = 730/1115 (65%), Gaps = 29/1115 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||| ||| |||| ||||||||| || | ||||| | || |||||||||| || Sbjct 1235 TACTTCGGTTTCAAGACCCTTGAGC-GATCATATCTCCTCCGTCTCGATGGCAAGATCTG 1177 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| ||||| | ||| | ||||| ||||| |||| |||||||| || || ||||| Sbjct 1176 CGAACGTCCACAACATATGATTATGCGTGTCGCTGTCGGAATCCACGGTGAGGATATTGA 1117 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 ||| | | ||||| ||| || ||||||| ||| || |||| ||||| ||||| Sbjct 1116 GGCTGCCATCGAGACCTACAACTTGATGTCCAGCAAA-TAC-TTCACCCACGCCTCACCA 1059 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || || ||| ||||||||||||| | | || | || ||||||||||||| || Sbjct 1058 ACACTTTTCGCTGCTGGTACACCACAAGCACAACTTTCATCATGCTTCCTTATCGACATG 999 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||||||| || | |||||||||| || | | | ||||| || |||||| Sbjct 998 AAGGAGGACAGCATTGATGGTATCTATGACACATTGAAGATTTGTGCCATGATTTCAAAG 939 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 ||||| |||||||| | | | || | | || | || ||| Sbjct 938 AACGCTGGTGGTATTGGTCTCAATGTTCACAGAATCCGTGCAACCGGTGCTTACATTGCT 879 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || ||||| || | || | || || |||| |||||||| || || ||| ||| || Sbjct 878 GGTACAAACGGAAACTCCAACGGAATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCC 819 Query 75563 CGCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCAT-CGCGGTCTACTTGGAA 75616 || ||||| |||||| || | |||| | || | | ||| | ||| | || Sbjct 818 CGATATGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCTTTCGCCATTTACCTTGAG 762 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 |||||||| || ||| | | |||||||| || | ||| ||||| || | || ||| Sbjct 761 CCATGGCACGCTGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAG 702 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 | ||| | |||||||| | | || ||||||||||| || ||||||||||| ||| Sbjct 701 GTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTT 642 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCG 75796 || || | ||| | | | || || || || || || | |||||| Sbjct 641 GAAAAGAACCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGCTTGGCCGACGTC 582 Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTA-GAGCCAATGC 75855 ||||| ||||| || || | || || || || ||||| | | | | | Sbjct 581 TACGGTGACGAGTTCGAGGCTTTGTATGAGAAATACGAGTCTGAGGGCAAGGGTC---GT 525 Query 75856 GACTGTACCA--GCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 | | | || ||| | ||||| | |||| ||| | | || || ||||| ||| Sbjct 524 AAAAGCATCAAGGCCCAAAAGCTTTGGTACTCTATCCTCGAGGCTCAAACTGAGACCGGA 465 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 | || | |||||||||||||||||||| ||| ||||| |||||||||||| | || Sbjct 464 AACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTTGGT 405 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || ||| |||||| || | || || || ||| | || ||| | |||||| Sbjct 404 ACCATCCGGAGCTCCAACTTGTGTACTGAGATTGTCGAATACTGTGCACCTGATGAGGTT 345 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACT 76093 ||||||||||| |||||||| | || || |||| ||||| |||| ||||| |||| Sbjct 344 GCTGTTTGCAACTTGGCATCGCTTGCTCTCCCAACATATGTTGATGAGAAGACTGCCACT 285 Query 76094 TTTGATTATGAAAAACTTCATGAAATC-ACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | ||| | | || ||||| ||| || | ||| |||| |||||| | ||| | Sbjct 284 TATGACTTCCAGAAGCTTCACGAAGTCTGCCAAG-TTGTCGTCAAAAACTTGAACAAGAT 226 Query 76153 CATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAG 76209 ||| || || | || || || |||| || ||||| ||| | || ||||| Sbjct 225 CATCGATGTCAACTACTACCCAGTTCCTGAG---GCAAGAAAGAGCAATTTCCGTCACAG 169 Query 76210 ACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATG 76244 |||||||| | | || || |||||||| || |||| Sbjct 168 ACCTATTGCTCTCGGCGTCCAAGGTCTTGCTGATG 134 >seq136 Length=27106 Score = 123 bits (136), Expect = 3e-23 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||| ||||| || ||||| ||| |||| | ||| || ||||| || ||||| | Sbjct 21470 GGTGCTAAGATTCCTCGAGGAGCCATTCTTTCTGGTCCACCTGGTACTGGTAAGACTTTA 21411 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTG-CTCTGCCGCAAA 175394 || || |||| || || |||||| ||| || ||| || |||| | || | | Sbjct 21410 CTAGCAAAGGCCACAGCTGGAGAATCAGGTGTACCTTTCTTC-AGTGTCAGTGGTTCCGA 21352 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||||||||||||||||||||||| |||||| || ||||| |||||||||| || || Sbjct 21351 GTTTGTGGAGATGTTTGTTGGTGTTGGTGCCTCCAGAGTTCGAGATCTCTTTGCTATGGC 21292 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGC 175499 | | | ||| || |||||| ||||||||||||| || ||||| Sbjct 21291 CAGAAAGAATACCCCTTGTATTATCTTCATTGATGAAATCGATGC 21247 >seq5294 Length=3402 Score = 86.0 bits (94), Expect = 7e-12 Identities = 298/460 (65%), Gaps = 10/460 (2%) Strand=Plus/Plus Query 76487 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 76546 ||| | || |||||| | | | || || |||||||| ||| || || ||| | Sbjct 163 GGTATCCGCAACAGTTTGCTTGTCGCTCCTATGCCAACTGCCAGTACTAGTCAGATCCTT 222 Query 76547 GGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCA 76606 || || || ||||| || |||||||| | ||||||||| | | || || Sbjct 223 GGATTCAACGAGTGCTTCGAGCCATACACCTCCAACATCTACTCTCGGCGTGTTCTTGCT 282 Query 76607 GGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGG 76666 || ||||| |||||||| || |||| || || | || || |||||| Sbjct 283 GGAGAGTTCCAAGTTGTCAACCCATGGCTTCTCAAGGATCTTGTTGATATGGGACTCTGG 342 Query 76667 TCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGAT 76726 ||| | | |||||| | | || | | ||||| || || |||||| | || | Sbjct 343 TCCGATAACATGAAGAACCGTATCATTGCCGATGGTGGATCGATCCAAAATGTTCCAAAC 402 Query 76727 ATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGA-AAGATGT 76785 ||||||| |||||||||| ||||||| || || ||||||||| | | || | Sbjct 403 ATCCCAGCTGATATCAAGGCTCTCTACAAGACTGTTTGGGAAATC----TCACAACGTAC 458 Query 76786 CATTG---ACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCT 76842 ||||| | ||||| || || |||||| || ||||| ||| |||| ||||| | Sbjct 459 CATTGTTCAGATGGCTGCTGACCGTGGTGCATTTATTGACCAATCTCAATCAATGAACAT 518 Query 76843 ATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATAT-GTACGCGTGGAAAC 76901 |||| | ||||| ||| ||| | | ||||||| | | | || ||||| Sbjct 519 CCACATGAAGGACCCAACCATGGGTAAGATTACCAGTATGCATTTCGCAGGC-TGGAAGT 577 Query 76902 AGGGGCTCAAAACCGGAATGTACTATCTCCGATCAAAGGC 76941 ||| ||||| || ||||||||||||||||| ||| ||| Sbjct 578 TGGGTCTCAAGACTGGAATGTACTATCTCCGTACAATGGC 617 >seq2230 Length=8342 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 27861 CTCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCCGTG 27920 ||| | ||| | ||| || | ||||| || | ||| ||||| || ||||| || ||||| Sbjct 8232 CTCCAAGACCAATTGAGCTACACGATCTCCCTCCTTGACCTCGAAATCTTTCTCACCGTG 8291 Query 27921 ATTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCAATAACACC 27971 |||||||| | ||||||||||| ||| ||||||| |||||| ||||| Sbjct 8292 GTTGAAGAGGAGGACTTTGACTTGACCGCGGTAGTCGGCATCAATTACACC 8342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596496900537120