Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 233 2e-56
seq136 123 3e-23
seq5294 86.0 7e-12
seq2230 84.2 3e-11
>seq1315
Length=11532
Score = 233 bits (258), Expect = 2e-56
Identities = 730/1115 (65%), Gaps = 29/1115 (3%)
Strand=Plus/Minus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204
||||| ||| |||| ||||||||| || | ||||| | || |||||||||| ||
Sbjct 1235 TACTTCGGTTTCAAGACCCTTGAGC-GATCATATCTCCTCCGTCTCGATGGCAAGATCTG 1177
Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264
||| ||||| | ||| | ||||| ||||| |||| |||||||| || || |||||
Sbjct 1176 CGAACGTCCACAACATATGATTATGCGTGTCGCTGTCGGAATCCACGGTGAGGATATTGA 1117
Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322
||| | | ||||| ||| || ||||||| ||| || |||| ||||| |||||
Sbjct 1116 GGCTGCCATCGAGACCTACAACTTGATGTCCAGCAAA-TAC-TTCACCCACGCCTCACCA 1059
Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382
|| || ||| ||||||||||||| | | || | || ||||||||||||| ||
Sbjct 1058 ACACTTTTCGCTGCTGGTACACCACAAGCACAACTTTCATCATGCTTCCTTATCGACATG 999
Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442
||||||||| || | |||||||||| || | | | ||||| || ||||||
Sbjct 998 AAGGAGGACAGCATTGATGGTATCTATGACACATTGAAGATTTGTGCCATGATTTCAAAG 939
Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502
||||| |||||||| | | | || | | || | || |||
Sbjct 938 AACGCTGGTGGTATTGGTCTCAATGTTCACAGAATCCGTGCAACCGGTGCTTACATTGCT 879
Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562
|| ||||| || | || | || || |||| |||||||| || || ||| ||| ||
Sbjct 878 GGTACAAACGGAAACTCCAACGGAATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCC 819
Query 75563 CGCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCAT-CGCGGTCTACTTGGAA 75616
|| ||||| |||||| || | |||| | || | | ||| | ||| | ||
Sbjct 818 CGATATGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCTTTCGCCATTTACCTTGAG 762
Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676
|||||||| || ||| | | |||||||| || | ||| ||||| || | || |||
Sbjct 761 CCATGGCACGCTGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAG 702
Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736
| ||| | |||||||| | | || ||||||||||| || ||||||||||| |||
Sbjct 701 GTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTT 642
Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCG 75796
|| || | ||| | | | || || || || || || | ||||||
Sbjct 641 GAAAAGAACCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGCTTGGCCGACGTC 582
Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTA-GAGCCAATGC 75855
||||| ||||| || || | || || || || ||||| | | | | |
Sbjct 581 TACGGTGACGAGTTCGAGGCTTTGTATGAGAAATACGAGTCTGAGGGCAAGGGTC---GT 525
Query 75856 GACTGTACCA--GCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913
| | | || ||| | ||||| | |||| ||| | | || || ||||| |||
Sbjct 524 AAAAGCATCAAGGCCCAAAAGCTTTGGTACTCTATCCTCGAGGCTCAAACTGAGACCGGA 465
Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973
| || | |||||||||||||||||||| ||| ||||| |||||||||||| | ||
Sbjct 464 AACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTTGGT 405
Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033
|| ||| |||||| || | || || || ||| | || ||| | ||||||
Sbjct 404 ACCATCCGGAGCTCCAACTTGTGTACTGAGATTGTCGAATACTGTGCACCTGATGAGGTT 345
Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACT 76093
||||||||||| |||||||| | || || |||| ||||| |||| ||||| ||||
Sbjct 344 GCTGTTTGCAACTTGGCATCGCTTGCTCTCCCAACATATGTTGATGAGAAGACTGCCACT 285
Query 76094 TTTGATTATGAAAAACTTCATGAAATC-ACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152
| ||| | | || ||||| ||| || | ||| |||| |||||| | ||| |
Sbjct 284 TATGACTTCCAGAAGCTTCACGAAGTCTGCCAAG-TTGTCGTCAAAAACTTGAACAAGAT 226
Query 76153 CATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAG 76209
||| || || | || || || |||| || ||||| ||| | || |||||
Sbjct 225 CATCGATGTCAACTACTACCCAGTTCCTGAG---GCAAGAAAGAGCAATTTCCGTCACAG 169
Query 76210 ACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATG 76244
|||||||| | | || || |||||||| || ||||
Sbjct 168 ACCTATTGCTCTCGGCGTCCAAGGTCTTGCTGATG 134
>seq136
Length=27106
Score = 123 bits (136), Expect = 3e-23
Identities = 164/225 (73%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335
||||| ||||| || ||||| ||| |||| | ||| || ||||| || ||||| |
Sbjct 21470 GGTGCTAAGATTCCTCGAGGAGCCATTCTTTCTGGTCCACCTGGTACTGGTAAGACTTTA 21411
Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTG-CTCTGCCGCAAA 175394
|| || |||| || || |||||| ||| || ||| || |||| | || | |
Sbjct 21410 CTAGCAAAGGCCACAGCTGGAGAATCAGGTGTACCTTTCTTC-AGTGTCAGTGGTTCCGA 21352
Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454
||||||||||||||||||||||| |||||| || ||||| |||||||||| || ||
Sbjct 21351 GTTTGTGGAGATGTTTGTTGGTGTTGGTGCCTCCAGAGTTCGAGATCTCTTTGCTATGGC 21292
Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGC 175499
| | | ||| || |||||| ||||||||||||| || |||||
Sbjct 21291 CAGAAAGAATACCCCTTGTATTATCTTCATTGATGAAATCGATGC 21247
>seq5294
Length=3402
Score = 86.0 bits (94), Expect = 7e-12
Identities = 298/460 (65%), Gaps = 10/460 (2%)
Strand=Plus/Plus
Query 76487 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 76546
||| | || |||||| | | | || || |||||||| ||| || || ||| |
Sbjct 163 GGTATCCGCAACAGTTTGCTTGTCGCTCCTATGCCAACTGCCAGTACTAGTCAGATCCTT 222
Query 76547 GGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCA 76606
|| || || ||||| || |||||||| | ||||||||| | | || ||
Sbjct 223 GGATTCAACGAGTGCTTCGAGCCATACACCTCCAACATCTACTCTCGGCGTGTTCTTGCT 282
Query 76607 GGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGG 76666
|| ||||| |||||||| || |||| || || | || || ||||||
Sbjct 283 GGAGAGTTCCAAGTTGTCAACCCATGGCTTCTCAAGGATCTTGTTGATATGGGACTCTGG 342
Query 76667 TCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGAT 76726
||| | | |||||| | | || | | ||||| || || |||||| | || |
Sbjct 343 TCCGATAACATGAAGAACCGTATCATTGCCGATGGTGGATCGATCCAAAATGTTCCAAAC 402
Query 76727 ATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGA-AAGATGT 76785
||||||| |||||||||| ||||||| || || ||||||||| | | || |
Sbjct 403 ATCCCAGCTGATATCAAGGCTCTCTACAAGACTGTTTGGGAAATC----TCACAACGTAC 458
Query 76786 CATTG---ACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCT 76842
||||| | ||||| || || |||||| || ||||| ||| |||| ||||| |
Sbjct 459 CATTGTTCAGATGGCTGCTGACCGTGGTGCATTTATTGACCAATCTCAATCAATGAACAT 518
Query 76843 ATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATAT-GTACGCGTGGAAAC 76901
|||| | ||||| ||| ||| | | ||||||| | | | || |||||
Sbjct 519 CCACATGAAGGACCCAACCATGGGTAAGATTACCAGTATGCATTTCGCAGGC-TGGAAGT 577
Query 76902 AGGGGCTCAAAACCGGAATGTACTATCTCCGATCAAAGGC 76941
||| ||||| || ||||||||||||||||| ||| |||
Sbjct 578 TGGGTCTCAAGACTGGAATGTACTATCTCCGTACAATGGC 617
>seq2230
Length=8342
Score = 84.2 bits (92), Expect = 3e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 27861 CTCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCCGTG 27920
||| | ||| | ||| || | ||||| || | ||| ||||| || ||||| || |||||
Sbjct 8232 CTCCAAGACCAATTGAGCTACACGATCTCCCTCCTTGACCTCGAAATCTTTCTCACCGTG 8291
Query 27921 ATTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCAATAACACC 27971
|||||||| | ||||||||||| ||| ||||||| |||||| |||||
Sbjct 8292 GTTGAAGAGGAGGACTTTGACTTGACCGCGGTAGTCGGCATCAATTACACC 8342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596496900537120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |