Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 109 1e-18
seq231 87.8 3e-12
>seq1973
Length=9094
Score = 109 bits (120), Expect = 1e-18
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||| |||||| || ||| || ||| || |||||| | || | | |
Sbjct 6350 CGAAGCACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCA 6291
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || ||||| || ||||| ||||| |||| ||||||||| || || || || || |||
Sbjct 6290 TCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTA 6231
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || || || | || | ||| ||| || || |||||||||||||| | || |||
Sbjct 6230 TCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATA 6171
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || || || || || |||||
Sbjct 6170 GTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136
>seq231
Length=23011
Score = 87.8 bits (96), Expect = 3e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238
||||||||||| || || || | ||| || | ||| ||||| || || || || | |
Sbjct 15350 ATATTATAGTCTGACAAGGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATCAAACGC 15409
Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298
|||||||| || || ||||| || || || || || |||| || | ||| |||||
Sbjct 15410 TGTTGATCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTG 15469
Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAA 193351
|| |||||||| || || || || || || ||||| || || || || || ||
Sbjct 15470 TCCGAAGACTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAA 15522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899544765865680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |