Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1315 141 3e-28 seq637 109 2e-18 seq2965 104 7e-17 seq3288 96.9 1e-14 >seq1315 Length=11532 Score = 141 bits (156), Expect = 3e-28 Identities = 563/880 (64%), Gaps = 17/880 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| ||||||||| |||| ||| || ||| |||||| || | |||||| ||||| Sbjct 363 GTATTCGACAATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTT 422 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| |||||||||||||| || ||| | ||| |||| ||||| | || || Sbjct 423 GCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGC 482 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATC--TGCCTTCC 155807 || || || ||| || | |||| || | ||||| | | | |||| || Sbjct 483 CTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGA--TGCTTTTACGACCCTTGCCCTCA 540 Query 155808 GACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||||| |||||| ||||| | | | || |||||||| || || ||||| Sbjct 541 GACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGA 600 Query 155868 CACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAAT 155924 |||| | ||||| | || | ||| | || || | ||||||| ||| || Sbjct 601 CACTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTC---AACACGCTTCATGAAG 657 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGA 155984 | ||| ||| | ||| ||||| || || | || |||||| | ||||| Sbjct 658 AGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGG 717 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| || || || | ||| || || ||||| || |||||| || || || || Sbjct 718 TTCTTTCGGAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCG 777 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| |||| | |||| ||||| ||||| ||||| || || || || ||||| || Sbjct 778 AAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACT 837 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | |||||||||| || || ||||| | || || || || ||| | | ||| | | Sbjct 838 CGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTT 897 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCAT 156221 | || | | |||| || || ||||||||||| | || ||||| || || Sbjct 898 GCACGGATTCTGTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAA 957 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA--TTGATAGTAGATAGC 156279 ||| | || | | ||||| ||||| || || | || | |||| || ||| Sbjct 958 ATCTTCAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATA--AGGAAGC 1015 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || | ||| | | ||||||| ||||| ||| ||||| |||| || || | | Sbjct 1016 ATGATGAAAGTTGTGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGA 1075 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAA 156399 | || || | ||||| | | ||| ||||| | ||||| || ||||| | Sbjct 1076 AGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGA 1135 Query 156400 TACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTC 156459 | | || || ||| | ||| |||||| || ||||| || ||| ||||| | | Sbjct 1136 TTCCGACAGCGACACGCATAATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGAC 1195 Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | || || |||| || || || || || || ||||| || Sbjct 1196 GGAGGAGATATGATCGCTCAAGGGTCTTGAAACCGAAGTA 1235 >seq637 Length=16155 Score = 109 bits (120), Expect = 2e-18 Identities = 204/300 (68%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 |||| | |||||| ||||||||||||||| | || ||||| || || || || ||| Sbjct 4739 TTGACAAGACGACGTTGAATATAACCAGTTTCGGCAGTCTTTACTGCAGTGTCGATGAGA 4680 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || |||||||| |||| || |||||||| | ||| ||| || ||| | | | | Sbjct 4679 CCTTCACGACCAGCCATGGCGTGGAAGAAAAACTCGGTTGGTGTTAACCCTCTGAGATAC 4620 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGG 302763 ||| | || |||||||| | | ||| || |||| || ||| || || || || || Sbjct 4619 GAGTTTTCCACGAAACCTCTTGACTCTGGGGAATAATCATCCTTTGTGAAATGAGGAAGT 4560 Query 302764 GTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCAC 302823 || | || | | ||| | || ||||||||||| ||||| || || || | | | Sbjct 4559 GTTCGGTATTTGAATCCGAAAGGAATACGCTTTCCTTCAACAGATTGTTGACCAACGAGC 4500 Query 302824 GAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATAATAACA 302883 | | ||||||| || ||||| | | ||||| || |||| || |||| |||||| Sbjct 4499 GCAGTCATCTGAGAGATATTGATAGTGGATCCCTTTGAACCAGACTTGGCCATGATAACA 4440 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| |||| || || |||||| | ||||| ||| Sbjct 5531 AGAATTTCCTTCAGACGAGGCACACCAAGGGTGACATT---CTTGGAAGACACACCGGCA 5475 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||||||||| || || | ||| |||| || || || || || || |||| | Sbjct 5474 AAATGGAAAGTATTGAGCGTCATTTGCGTAGCGGGTTCTCCGATCGACTGAGCAGCAAGC 5415 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||||| || Sbjct 5414 ACTCCAACCATTTCTCCAGG 5395 >seq2965 Length=6591 Score = 104 bits (114), Expect = 7e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| || || ||||| | || |||||| | ||||||||| |||||| | | Sbjct 5790 TTCCTTGCATCAAGAAGAAGGCCGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTCTA 5849 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| ||||||||||| ||||||| || ||||| || || ||||||||| | | Sbjct 5850 CCTTTGCTCAACGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTT 5909 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || || || || ||| | || |||||||| | | |||| || || || |||| Sbjct 5910 TCGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACG 5969 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | | || || | ||||||| || |||||||| || || Sbjct 5970 AGTTGATCTCCCGTGACGAGGGTCTCCACACCGACTTCGC 6009 >seq3288 Length=5967 Score = 96.9 bits (106), Expect = 1e-14 Identities = 114/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| |||||||| |||||||||||||| | || ||| | Sbjct 187 TGAGCAATTGTCATACGAGAAGGAATAGCGTGGGGATTGATGATAAGATCCGGTACAATG 246 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTT-TCCTCAATAA-TGTTTCCAATAGTTCCCTTTT 251956 || | |||||| ||||| |||| |||| ||| || | ||||| || ||||||| Sbjct 247 CCCTGGCAAGTGAAAGGCATGTCCTCCATCCT--ATACGTGATACCAATGGTACCCTTTT 304 Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||||||||| |||||| |||||||| Sbjct 305 GTCCGTGACGAGAAGCGAACTTGTCACCAAT 335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471633756643413