Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq3297 118 1e-20
seq2965 109 7e-18
seq4804 89.7 6e-12
seq1315 87.8 2e-11
>seq3297
Length=5950
Score = 118 bits (130), Expect = 1e-20
Identities = 89/105 (85%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||| ||||||||||| || | ||| |||| |||||| | || || |||||||
Sbjct 799 CCAACTACCTTGACATCAAGCCACTCTTGGATGTTGGTTGCAAGACCGTTGCGAACATGA 740
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||| || ||||| |||||||||||||| || ||||
Sbjct 739 TCAAGGGCAAGTCTCCAGAGGAAATCCGCAAGACCTTCAATATCA 695
>seq2965
Length=6591
Score = 109 bits (120), Expect = 7e-18
Identities = 175/251 (70%), Gaps = 3/251 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||||||||| || ||| ||||| ||||| ||| | |||||| | ||||
Sbjct 5655 GAGTGGATGTTCTCCATCATGATTTGGAAACCGTAGAAGAATCGGGCCTCTGGGATTTGG 5596
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || | |||| || || ||||||||| || || |||||| ||| |||||
Sbjct 5595 ACTTCACTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCGGAGGCAGCGAAG 5536
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGG 869809
||||| |||||||| ||| |||| ||| ||||| ||| ||||| ||||| |
Sbjct 5535 AAAGCGAGGACGTGGGAGATGAAGTAGCGTTCGTCATCGTTGAGCTTGTTGTTCCAGTCG 5476
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| || | || || | ||| ||||||||||||| || || |||||||| |||
Sbjct 5475 TGGAGATCCTTGGAAAGATCAATCTCTTCGGCGGTCCAGAAAGAAGCTTCGGCCTTCTTG 5416
Query 869870 TACATCTCCCA 869880
||||| | |||
Sbjct 5415 TACATTTGCCA 5405
Score = 105 bits (116), Expect = 8e-17
Identities = 168/241 (70%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | || ||| |||||| ||||||||||| || |||| |||||
Sbjct 6306 GCCTTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATG 6247
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| |||||| |||||| ||||| || |
Sbjct 6246 TTCTCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTTTCATTACCGAGAGAGAGG 6187
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || || || ||||| ||||| ||||| || ||| | | ||||||||||||||
Sbjct 6186 AGGAGCCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGA 6127
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | ||| ||| ||||||| ||| ||||| || |||||| ||||
Sbjct 6126 AGAGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATG 6067
Query 868931 A 868931
|
Sbjct 6066 A 6066
>seq4804
Length=3896
Score = 89.7 bits (98), Expect = 6e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
|| || || || || |||||||| || || ||| || || || || | || |||
Sbjct 2326 GATAGTATTGGAGGAACGGTGACTTGTGTCATTCGAAATGTACCAAGTGGGTTGGGAGAG 2267
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| || ||||||||||| |||||| ||| || || || |||||| |||||||| ||
Sbjct 2266 CCATGTTTTGACAAGATGGAGGCCATGCTTGCTCATGCTATGCTGAGTATCCCGGCTACA 2207
Query 19167 AAGGGATTCGAGATTGG 19183
|||||||||||||||||
Sbjct 2206 AAGGGATTCGAGATTGG 2190
>seq1315
Length=11532
Score = 87.8 bits (96), Expect = 2e-11
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524
|||| || ||||| ||||| || || || || ||||||||| |||||||||||| ||
Sbjct 668 TCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGA 727
Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567
||||||| | |||| || || |||||||| ||||| |||||
Sbjct 728 GGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTA 770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106339151405433
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |