Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3297 118 1e-20 seq2965 109 7e-18 seq4804 89.7 6e-12 seq1315 87.8 2e-11 >seq3297 Length=5950 Score = 118 bits (130), Expect = 1e-20 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| ||||||||||| || | ||| |||| |||||| | || || ||||||| Sbjct 799 CCAACTACCTTGACATCAAGCCACTCTTGGATGTTGGTTGCAAGACCGTTGCGAACATGA 740 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||| || ||||| |||||||||||||| || |||| Sbjct 739 TCAAGGGCAAGTCTCCAGAGGAAATCCGCAAGACCTTCAATATCA 695 >seq2965 Length=6591 Score = 109 bits (120), Expect = 7e-18 Identities = 175/251 (70%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||| ||||| ||||| ||| | |||||| | |||| Sbjct 5655 GAGTGGATGTTCTCCATCATGATTTGGAAACCGTAGAAGAATCGGGCCTCTGGGATTTGG 5596 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || | |||| || || ||||||||| || || |||||| ||| ||||| Sbjct 5595 ACTTCACTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCGGAGGCAGCGAAG 5536 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGG 869809 ||||| |||||||| ||| |||| ||| ||||| ||| ||||| ||||| | Sbjct 5535 AAAGCGAGGACGTGGGAGATGAAGTAGCGTTCGTCATCGTTGAGCTTGTTGTTCCAGTCG 5476 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | || | || || | ||| ||||||||||||| || || |||||||| ||| Sbjct 5475 TGGAGATCCTTGGAAAGATCAATCTCTTCGGCGGTCCAGAAAGAAGCTTCGGCCTTCTTG 5416 Query 869870 TACATCTCCCA 869880 ||||| | ||| Sbjct 5415 TACATTTGCCA 5405 Score = 105 bits (116), Expect = 8e-17 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| |||||| ||||||||||| || |||| ||||| Sbjct 6306 GCCTTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATG 6247 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| |||||| |||||| ||||| || | Sbjct 6246 TTCTCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTTTCATTACCGAGAGAGAGG 6187 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || || || ||||| ||||| ||||| || ||| | | |||||||||||||| Sbjct 6186 AGGAGCCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGA 6127 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||| ||| ||||||| ||| ||||| || |||||| |||| Sbjct 6126 AGAGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATG 6067 Query 868931 A 868931 | Sbjct 6066 A 6066 >seq4804 Length=3896 Score = 89.7 bits (98), Expect = 6e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 || || || || || |||||||| || || ||| || || || || | || ||| Sbjct 2326 GATAGTATTGGAGGAACGGTGACTTGTGTCATTCGAAATGTACCAAGTGGGTTGGGAGAG 2267 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || || ||||||||||| |||||| ||| || || || |||||| |||||||| || Sbjct 2266 CCATGTTTTGACAAGATGGAGGCCATGCTTGCTCATGCTATGCTGAGTATCCCGGCTACA 2207 Query 19167 AAGGGATTCGAGATTGG 19183 ||||||||||||||||| Sbjct 2206 AAGGGATTCGAGATTGG 2190 >seq1315 Length=11532 Score = 87.8 bits (96), Expect = 2e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| || ||||| ||||| || || || || ||||||||| |||||||||||| || Sbjct 668 TCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGA 727 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 ||||||| | |||| || || |||||||| ||||| ||||| Sbjct 728 GGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTA 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106339151405433