Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1315 183 3e-41 seq1973 113 4e-20 seq231 95.1 1e-14 >seq1315 Length=11532 Score = 183 bits (202), Expect = 3e-41 Identities = 619/949 (65%), Gaps = 39/949 (4%) Strand=Plus/Plus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139 || ||| || | |||||| || || || || || || | | |||||||||||| || | Sbjct 321 AAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGACAATCTCAGT 380 Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199 |||||| || | | ||| ||||| | ||| | ||| ||||| |||||||| ||||| Sbjct 381 ACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGC 440 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAA 139259 ||| ||||||||||| | || | || || || ||| | ||| | || | | | Sbjct 441 ATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGT--AC 498 Query 139260 CAAGTCCCTAGCTTGTAT---TTGACGC----ACGTAAAGTT--CGTCGCGCTCGTACTT 139310 ||| ||||| | |||| || ||| | || | || |||||| || Sbjct 499 CAA------AGCTTTTGGGCCTTGATGCTTTTACG-ACCCTTGCCCTCAGACTCGTATTT 551 Query 139311 TTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAG 139369 || || | | ||||| |||| |||||||| |||| | | | |||||| || || Sbjct 552 CTCATACAAAGCCTCGAACTCGT-CACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAG 610 Query 139370 GACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCC 139429 | ||||| | | ||| || |||| | || ||| ||||||| ||||| ||||||| Sbjct 611 GGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCC 670 Query 139430 ACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTC--AT 139487 | | |||| | | | ||| || || || ||| || ||| |||| | Sbjct 671 AGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTC--TTTCGGAG 728 Query 139488 GTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTT 139547 || ||||| || ||||| |||||||||||||| || || || ||||| | || || Sbjct 729 GTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGG 788 Query 139548 CCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGG 139604 || ||| ||||||||||| || | ||| | | || ||||| || || | ||| || Sbjct 789 ACGCTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGG 848 Query 139605 CTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG---GGACTGTTGCGAGCTCGGAC 139661 | | ||| | | ||||||| || | | ||| | || | | || |||| Sbjct 849 AACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTT---GCACGGAT 905 Query 139662 GTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAA 139721 || ||||||| || || || || | || || || | | ||| || Sbjct 906 TCTGTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAA 965 Query 139722 TGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAG 139781 ||| || || ||||| |||||||| |||| ||| || || |||||||| ||||| Sbjct 966 TGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAG 1025 Query 139782 TTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAAC-ATTTGTT 139840 ||| | | || || || || || || || || || ||||| ||||| ||||| | Sbjct 1026 TTGTGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCT 1085 Query 139841 TCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAG 139900 |||||||| | ||| || |||||||| | |||||||| |||||||| ||||||| Sbjct 1086 G-GACATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTCCGACAG 1144 Query 139901 AGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGAT 139960 ||| ||||| | ||||||||| |||||| | | ||| |||| |||| Sbjct 1145 CGACACGCATAATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGACGGAGGAGAT 1204 Query 139961 A--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 | | || ||| ||||||||| | || ||||| |||||||||||| Sbjct 1205 ATGATCG--CTCAAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAATCG 1251 >seq1973 Length=9094 Score = 113 bits (124), Expect = 4e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 |||||||| || || || ||||| ||||| | | ||||| |||| | || || Sbjct 5420 ACCGGTAAGACCATCACCCTCGAGGTAGAGTCGTCGGACACCATAGACAACGTCAAGAGC 5479 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || ||||| || || || || ||||| |||||||||||||| || Sbjct 5480 AAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAACGCTTGATCTTTGCCGGAAAG 5539 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||| | | | || ||||| |||||||| ||||| ||||| || ||| Sbjct 5540 CAGCTCGAGGATGGTCGTACTCTATCTGATTACAACATTCAGAAGGAGTCGACTCTCCAC 5599 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || ||||| || |||||||| | ||||| || | | Sbjct 6136 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 6195 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||||||| || || || || || || || |||||| Sbjct 6196 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCGGATCAA 6255 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| || ||||| || || |||||||| | | | | || || ||| Sbjct 6256 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACCCTCAGCGACTACAAC 6315 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || | || |||||| | || | || ||||| Sbjct 6316 ATTCAAAAGGAGAGCACTTTGCATTTGGTGCTTCGCCTTCGTGGAGG 6362 >seq231 Length=23011 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || ||||| || ||||| || || || || | | ||||| | || | Sbjct 15516 AAGACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGTCTTCGGACACTATCGACAAT 15457 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || ||||| || || |||||||| ||||||||||| Sbjct 15456 GTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGTTTGATCTTC 15397 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 || || || || || |||||| | | | ||||||| ||||| || ||||||| Sbjct 15396 GCTGGAAAGCAACTCGAGGATGGACGCACCTTGTCAGACTATAATATCCAAAAGG 15342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449842774353720