Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 183 3e-41
seq1973 113 4e-20
seq231 95.1 1e-14
>seq1315
Length=11532
Score = 183 bits (202), Expect = 3e-41
Identities = 619/949 (65%), Gaps = 39/949 (4%)
Strand=Plus/Plus
Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139
|| ||| || | |||||| || || || || || || | | |||||||||||| || |
Sbjct 321 AAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGACAATCTCAGT 380
Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199
|||||| || | | ||| ||||| | ||| | ||| ||||| |||||||| |||||
Sbjct 381 ACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGC 440
Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAA 139259
||| ||||||||||| | || | || || || ||| | ||| | || | | |
Sbjct 441 ATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGT--AC 498
Query 139260 CAAGTCCCTAGCTTGTAT---TTGACGC----ACGTAAAGTT--CGTCGCGCTCGTACTT 139310
||| ||||| | |||| || ||| | || | || |||||| ||
Sbjct 499 CAA------AGCTTTTGGGCCTTGATGCTTTTACG-ACCCTTGCCCTCAGACTCGTATTT 551
Query 139311 TTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAG 139369
|| || | | ||||| |||| |||||||| |||| | | | |||||| || ||
Sbjct 552 CTCATACAAAGCCTCGAACTCGT-CACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAG 610
Query 139370 GACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCC 139429
| ||||| | | ||| || |||| | || ||| ||||||| ||||| |||||||
Sbjct 611 GGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCC 670
Query 139430 ACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTC--AT 139487
| | |||| | | | ||| || || || ||| || ||| |||| |
Sbjct 671 AGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTC--TTTCGGAG 728
Query 139488 GTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTT 139547
|| ||||| || ||||| |||||||||||||| || || || ||||| | || ||
Sbjct 729 GTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGG 788
Query 139548 CCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGG 139604
|| ||| ||||||||||| || | ||| | | || ||||| || || | ||| ||
Sbjct 789 ACGCTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGG 848
Query 139605 CTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG---GGACTGTTGCGAGCTCGGAC 139661
| | ||| | | ||||||| || | | ||| | || | | || ||||
Sbjct 849 AACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTT---GCACGGAT 905
Query 139662 GTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAA 139721
|| ||||||| || || || || | || || || | | ||| ||
Sbjct 906 TCTGTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAA 965
Query 139722 TGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAG 139781
||| || || ||||| |||||||| |||| ||| || || |||||||| |||||
Sbjct 966 TGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAG 1025
Query 139782 TTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAAC-ATTTGTT 139840
||| | | || || || || || || || || || ||||| ||||| ||||| |
Sbjct 1026 TTGTGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCT 1085
Query 139841 TCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAG 139900
|||||||| | ||| || |||||||| | |||||||| |||||||| |||||||
Sbjct 1086 G-GACATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTCCGACAG 1144
Query 139901 AGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGAT 139960
||| ||||| | ||||||||| |||||| | | ||| |||| ||||
Sbjct 1145 CGACACGCATAATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGACGGAGGAGAT 1204
Query 139961 A--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007
| | || ||| ||||||||| | || ||||| ||||||||||||
Sbjct 1205 ATGATCG--CTCAAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAATCG 1251
>seq1973
Length=9094
Score = 113 bits (124), Expect = 4e-20
Identities = 133/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787
|||||||| || || || ||||| ||||| | | ||||| |||| | || ||
Sbjct 5420 ACCGGTAAGACCATCACCCTCGAGGTAGAGTCGTCGGACACCATAGACAACGTCAAGAGC 5479
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||| ||||| || ||||| || || || || ||||| |||||||||||||| ||
Sbjct 5480 AAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAACGCTTGATCTTTGCCGGAAAG 5539
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
||||| |||||| | | | || ||||| |||||||| ||||| ||||| || |||
Sbjct 5540 CAGCTCGAGGATGGTCGTACTCTATCTGATTACAACATTCAGAAGGAGTCGACTCTCCAC 5599
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| |||| || || ||||| || |||||||| | ||||| || | |
Sbjct 6136 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 6195
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || || ||||||||| || || || || || || || ||||||
Sbjct 6196 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCGGATCAA 6255
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || ||||| || ||||| || || |||||||| | | | | || || |||
Sbjct 6256 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACCCTCAGCGACTACAAC 6315
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||||||||| || | || |||||| | || | || |||||
Sbjct 6316 ATTCAAAAGGAGAGCACTTTGCATTTGGTGCTTCGCCTTCGTGGAGG 6362
>seq231
Length=23011
Score = 95.1 bits (104), Expect = 1e-14
Identities = 126/175 (72%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || ||||| || ||||| || || || || | | ||||| | || |
Sbjct 15516 AAGACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGTCTTCGGACACTATCGACAAT 15457
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || |||||||| ||||| || ||||| || || |||||||| |||||||||||
Sbjct 15456 GTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGTTTGATCTTC 15397
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893
|| || || || || |||||| | | | ||||||| ||||| || |||||||
Sbjct 15396 GCTGGAAAGCAACTCGAGGATGGACGCACCTTGTCAGACTATAATATCCAAAAGG 15342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449842774353720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |