Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3297 118 2e-20 seq2965 98.7 2e-14 >seq3297 Length=5950 Score = 118 bits (130), Expect = 2e-20 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||| ||||||||||| ||| | ||| | || ||||||||||| || ||| | | Sbjct 799 CCAACTACCTTGACATCAAGCCACTCTTGGATGTTGGTTGCAAGACCGTTGCGAACATGA 740 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||||| || ||||| |||||||||||||| || |||| Sbjct 739 TCAAGGGCAAGTCTCCAGAGGAAATCCGCAAGACCTTCAATATCA 695 >seq2965 Length=6591 Score = 98.7 bits (108), Expect = 2e-14 Identities = 171/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || | || ||| |||||| ||||||||||| || ||| Sbjct 6314 TGACACCGGCCTTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGA 6255 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| |||||||| | ||| ||| || |||| Sbjct 6254 GAGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTTTCATTACCGA 6195 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | || || || || || |||||||| |||||||| || ||| | | |||||||| Sbjct 6194 GAGAGAGGAGGAGCCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCA 6135 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| || || || || | ||| | | ||||||| ||| ||||| || |||| Sbjct 6134 TGCCGAGAAGAGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCT 6075 Query 794131 CGATGATGA 794139 || |||||| Sbjct 6074 CGGTGATGA 6066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915209354404811