Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 104 2e-17
seq231 100 2e-16
seq47 87.8 1e-12
>seq1973
Length=9094
Score = 104 bits (114), Expect = 2e-17
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | || ||||||||||||||| || || ||||| | || ||||
Sbjct 5607 AGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGATAGAGTACGACCATCC 5548
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||||||||| ||||||| |||||||||||| | || | |||||||||||
Sbjct 5547 TCGAGCTGCTTTCCGGCAAAGATCAAGCGTTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 5488
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| |||| | || | ||| || || | ||| ||||||
Sbjct 5487 TGGATCTTGCTCTTGACGTTGTCTATGGTGTCCGACGACTCTACCTCGAGGGTGATGGTC 5428
Query 34946 TTTCCCGTGA 34955
|| || ||||
Sbjct 5427 TTACCGGTGA 5418
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 8/204 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| ||| ||||||||| || || ||||| || || |||| | ||
Sbjct 5891 AGAACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCC 5832
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| ||||| ||||| || || || ||||| | || | |||||||||||
Sbjct 5831 TCGAGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCC 5772
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| ||| ||| ||||| || | || ||
Sbjct 5771 TGAATCTTCGACTTGAC--AT--TGTCGATGGTATCACTGGATTCGACTTCGAGAGTGAT 5716
Query 34942 GGTCTTTCCCGTGAGGGTCTTTAC 34965
|||||| || || | |||||| ||
Sbjct 5715 GGTCTTGCCAGTCAAGGTCTTGAC 5692
Score = 91.5 bits (100), Expect = 1e-13
Identities = 167/241 (69%), Gaps = 9/241 (4%)
Strand=Plus/Minus
Query 34742 CAATCATT-TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTT 34800
|| ||||| |||||| | | | || |||| || | ||||||||||| ||||||||
Sbjct 6372 CACTCATTGTCCTCCACGAAGGCGAAGCACCAAATGCAAAGTGCTCTCCTTTTGAATGTT 6313
Query 34801 ATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTG 34860
||||| ||| | || |||| |||| |||||| |||||||| |||| ||| || ||
Sbjct 6312 GTAGTCGCTGAGGGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTG 6253
Query 34861 GTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----T 34916
|| | || | |||||||| || | || ||| ||||| || |||| || |
Sbjct 6252 ATCCGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGAC--AT--TATCAATTGTGT 6197
Query 34917 CATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976
| | ||| || || | || || ||||| || || || ||||| || ||||||||||
Sbjct 6196 CCGAAGACTCAACTTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCA 6137
Query 34977 T 34977
|
Sbjct 6136 T 6136
>seq231
Length=23011
Score = 100 bits (110), Expect = 2e-16
Identities = 135/186 (73%), Gaps = 8/186 (4%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
|||| || || |||||||| || | | |||| |||| || ||||||||||| |||||||
Sbjct 15342 CCTTTTGGATATTATAGTCTGACAAGGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGA 15401
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| || || || || | || | ||||||||||| | || || ||||| ||
Sbjct 15402 TCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 15458
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || | |||||| |||| ||| |||||||| ||||||||||||||
Sbjct 15459 -TGTCGATAGTGTCCGAAGACTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTCTTG 15517
Query 34964 ACAAAG 34969
|| |||
Sbjct 15518 ACGAAG 15523
>seq47
Length=33200
Score = 87.8 bits (96), Expect = 1e-12
Identities = 136/192 (71%), Gaps = 8/192 (4%)
Strand=Plus/Minus
Query 34768 GACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTC 34827
||| || |||| ||| ||||||||| ||||| |||||||| ||| | || | || ||
Sbjct 24289 GACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGTCCGTCCTC 24230
Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887
||||||||||| |||||||||| || || || || | || | ||||||||||| |
Sbjct 24229 GAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTG 24170
Query 34888 TATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGG 34943
|| || || || || ||||||| || | ||| || || | ||| ||||
Sbjct 24169 AATCTTGGACTTAAC--AT--TATCGATGGTGTCCGAAGACTCAACCTCTAGGGTGATGG 24114
Query 34944 TCTTTCCCGTGA 34955
|||| |||||||
Sbjct 24113 TCTTGCCCGTGA 24102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325654102504631
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