Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1973 104 2e-17 seq231 100 2e-16 seq47 87.8 1e-12 >seq1973 Length=9094 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||||||||| || || ||||| | || |||| Sbjct 5607 AGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGATAGAGTACGACCATCC 5548 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||| ||||||| |||||||||||| | || | ||||||||||| Sbjct 5547 TCGAGCTGCTTTCCGGCAAAGATCAAGCGTTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 5488 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| |||| | || | ||| || || | ||| |||||| Sbjct 5487 TGGATCTTGCTCTTGACGTTGTCTATGGTGTCCGACGACTCTACCTCGAGGGTGATGGTC 5428 Query 34946 TTTCCCGTGA 34955 || || |||| Sbjct 5427 TTACCGGTGA 5418 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| ||||||||| || || ||||| || || |||| | || Sbjct 5891 AGAACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCC 5832 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||| ||||| || || || ||||| | || | ||||||||||| Sbjct 5831 TCGAGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCC 5772 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| ||| ||| ||||| || | || || Sbjct 5771 TGAATCTTCGACTTGAC--AT--TGTCGATGGTATCACTGGATTCGACTTCGAGAGTGAT 5716 Query 34942 GGTCTTTCCCGTGAGGGTCTTTAC 34965 |||||| || || | |||||| || Sbjct 5715 GGTCTTGCCAGTCAAGGTCTTGAC 5692 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/241 (69%), Gaps = 9/241 (4%) Strand=Plus/Minus Query 34742 CAATCATT-TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTT 34800 || ||||| |||||| | | | || |||| || | ||||||||||| |||||||| Sbjct 6372 CACTCATTGTCCTCCACGAAGGCGAAGCACCAAATGCAAAGTGCTCTCCTTTTGAATGTT 6313 Query 34801 ATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTG 34860 ||||| ||| | || |||| |||| |||||| |||||||| |||| ||| || || Sbjct 6312 GTAGTCGCTGAGGGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTG 6253 Query 34861 GTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----T 34916 || | || | |||||||| || | || ||| ||||| || |||| || | Sbjct 6252 ATCCGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGAC--AT--TATCAATTGTGT 6197 Query 34917 CATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976 | | ||| || || | || || ||||| || || || ||||| || |||||||||| Sbjct 6196 CCGAAGACTCAACTTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCA 6137 Query 34977 T 34977 | Sbjct 6136 T 6136 >seq231 Length=23011 Score = 100 bits (110), Expect = 2e-16 Identities = 135/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || || |||||||| || | | |||| |||| || ||||||||||| ||||||| Sbjct 15342 CCTTTTGGATATTATAGTCTGACAAGGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGA 15401 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || || || || | || | ||||||||||| | || || ||||| || Sbjct 15402 TCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 15458 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || | |||||| |||| ||| |||||||| |||||||||||||| Sbjct 15459 -TGTCGATAGTGTCCGAAGACTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTCTTG 15517 Query 34964 ACAAAG 34969 || ||| Sbjct 15518 ACGAAG 15523 >seq47 Length=33200 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 34768 GACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTC 34827 ||| || |||| ||| ||||||||| ||||| |||||||| ||| | || | || || Sbjct 24289 GACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGTCCGTCCTC 24230 Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887 ||||||||||| |||||||||| || || || || | || | ||||||||||| | Sbjct 24229 GAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTG 24170 Query 34888 TATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGG 34943 || || || || || ||||||| || | ||| || || | ||| |||| Sbjct 24169 AATCTTGGACTTAAC--AT--TATCGATGGTGTCCGAAGACTCAACCTCTAGGGTGATGG 24114 Query 34944 TCTTTCCCGTGA 34955 |||| ||||||| Sbjct 24113 TCTTGCCCGTGA 24102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325654102504631