Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 120 2e-22
>seq1973
Length=9094
Score = 120 bits (132), Expect = 2e-22
Identities = 167/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 29553 TCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATA 29612
|| ||||||||| | | || ||||||||||| | ||| || ||||||||||| ||
Sbjct 6369 TCATTGTCCTCCACGAAGGCGAAGCACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTA 6310
Query 29613 ATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATC 29672
|| | ||| ||| ||| || | ||| ||||| || | ||||||| || |||||
Sbjct 6309 GTCGCTGAGGGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATC 6250
Query 29673 CGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAG 29732
||| ||||||||||| || || || | ||| |||||| | || | ||||| |||
Sbjct 6249 CGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGA 6190
Query 29733 TTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| | || ||||| ||||| || | || ||||| || ||||||||
Sbjct 6189 CTCAACTTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136
Score = 102 bits (112), Expect = 6e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||||||||| || || || || || || || || || | | |||||
Sbjct 6123 ACGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCC 6064
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| |||||||| ||||| || | || | || || |||||||| ||||||||||| ||
Sbjct 6063 GTCCTCGAGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGAATACCCTCCTT 6004
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|| || | ||| |||||| | || | ||||| ||| ||| || || ||||| ||
Sbjct 6003 ATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTCGACCTCGAGAGTGAT 5944
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| || | || || || || || |||||
Sbjct 5943 GGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 5908
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385173429819609
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |