Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2057 109 4e-18 seq4876 107 1e-17 seq281 107 1e-17 seq637 93.3 3e-13 >seq2057 Length=8825 Score = 109 bits (120), Expect = 4e-18 Identities = 473/743 (64%), Gaps = 4/743 (1%) Strand=Plus/Minus Query 282140 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 282199 ||| | |||| ||||||||||| || | ||| | | || || | || || ||| Sbjct 8535 TCTTTCTTATGCTTTCTCTTGAATTCGTTAACGAAGTGGTTAACGAGTCTGTTGTCGAAA 8476 Query 282200 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 282259 || ||||| ||||| | ||||| |||| || | | |||| || | || || || Sbjct 8475 TCCTCACCACCCAAGTGAGTATCACCTGCAGTGGACTTGACTTCAAAGATACCCTCCTCG 8416 Query 282260 AGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319 | | ||| || | ||||| ||||| ||||| | |||||| || || ||||| Sbjct 8415 ATGGTCAAGAGTGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACATTTCGC 8356 Query 282320 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 282379 || || || || || ||||| || |||| || || || || || || ||||| Sbjct 8355 TCACCCTCAACCTTCTTGTCCAGACCGTAGGCAATGGCGGCCGCGGTAGGCTCGTTAATG 8296 Query 282380 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 282439 || | | ||| || || ||||| || || ||||| || |||||||| | ||||||| Sbjct 8295 ATACGGAGAACGTTGAGGCCAGCGATCAGACCGGCATCCTTGGTGGCTTGACGTTGTGAA 8236 Query 282440 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATAAGC 282498 ||| | || ||||| || || || | ||||| | |||| || | |||| ||||| Sbjct 8235 TCGGTGAAGTATGCTGGGACTGTGACGACGGCGT-TGTTGACGGTTCCACCAAGGTAAGC 8177 Query 282499 GCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG 282558 || || | | |||| || || ||||| || || |||| ||||| | |||| Sbjct 8176 CTCGGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATTTCCTCTGGTGTGAATTG 8117 Query 282559 CTTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTT 282617 ||| ||| |||| | | || | | | || || |||| | | || Sbjct 8116 CTTCTTCTCACCCTTGAACTCAATCTCGACGACA-GGCTTTCCACCACGGTCGAGGACGG 8058 Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677 | || || | | |||||||| | || || ||||| || | || || || | Sbjct 8057 TGAAAGGGAAGTGCTTCATATCGGCCTGGACCTCCTGGTCTGCGAACTTTCGTCCGATCA 7998 Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737 || ||||| || || | || |||| || || | || | || | || || |||| Sbjct 7997 GACGCTTTGCGTCGAAGACTGTGTTGGCGGGGTTCATGGCGACCTGGTTCTTTGCGGCAT 7938 Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797 |||| |||||| | || || ||||| || | ||| | || || || || || || || | Sbjct 7937 CTCCGATCAGACGCTCGGTATCTGTGAAGGCAACGAAGGAAGGGGTAGTTCGGTTTCCCT 7878 Query 282798 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTG 282857 | || || || ||||| |||| | | ||| | | | ||||||||| | || | Sbjct 7877 GGTCGTTGGCGATAATCTCAATTCGATCATCACGGTAGATACCTACACAGGAGTAGGTGG 7818 Query 282858 TTCCTAAATCAATACCAATAGCA 282880 |||| | ||| ||||| || ||| Sbjct 7817 TTCCAAGATCGATACCTATGGCA 7795 >seq4876 Length=3815 Score = 107 bits (118), Expect = 1e-17 Identities = 255/383 (67%), Gaps = 3/383 (1%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| || || | ||| || |||||||| | ||| || || || || ||||| ||||| Sbjct 614 GCAGAGACGTTCATAATTCCGTTGGCATCAACATCGAAGGTAACCTCGATTTGTGGGACA 555 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | ||||||||||| || | | ||| | |||| | || || || || Sbjct 554 CCACGTGGTGCAGGTGGGATACCAGTAAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTG 495 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 ||| || || ||||||||||| | ||||||| || ||| ||| || || || | Sbjct 494 GTGCGTTGACGCTCACCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAG 435 Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665 || | || || ||| || || || || || |||||||| |||| |||||| Sbjct 434 GTGGAGAAGACCTCGGACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATAAGCTTGGTC 375 Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725 || ||||||||| || || | ||| ||||| | || | |||||| | |||| || Sbjct 374 ATTTGACCACCAGCAGTCTCGATACCGAGAGACAATGGCGCGACATCGAGGAGGAGGATC 315 Query 281726 T--TTTGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || | | || | | || | || ||||| || || || | |||||||| Sbjct 314 TCGTTGGTGGACTTGGAAGAGGTGTCTCCGGAGAGAATGGCAGCCTGGACGGCAGCACCG 255 Query 281783 TATGCAACAGCTTCATCAGGATT 281805 || ||||||||||||||||| || Sbjct 254 TAGGCAACAGCTTCATCAGGGTT 232 >seq281 Length=21818 Score = 107 bits (118), Expect = 1e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || ||||| ||||| |||| |||||||||||||| || || | | ||||| ||| ||| Sbjct 9564 TTCTCAAGTCCATATGCAAGCGCAGCAGCAGTTGGCTCGTTGACCACTCTCAGAACGTTA 9623 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||| |||||| || ||||| || |||||||| | |||||||||||| || || || Sbjct 9624 AGACCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTAAGCT 9683 Query 282455 GGAACAGTAATAACGGC 282471 || || || | ||| || Sbjct 9684 GGGACTGTGACAACAGC 9700 >seq637 Length=16155 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 || ||||||||||| | |||||||||||||||||| | || | || || | || ||| Sbjct 4645 GAGTTTTTCTTCCACGCCATGGCTGGTCGTGAAGGTCTCATCGACACTGCAGTAAAGACT 4704 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 || || ||||||||||||||| | |||||||| ||||||||| | | || Sbjct 4705 GCCGAAACTGGTTATATTCAACGTCGTCTTGTCAAAGCACTTGAAGATGTCATTGCCAAA 4764 Query 435253 TATGATGGTACAGTGAGAAAT 435273 |||||||| ||||| ||||| Sbjct 4765 TATGATGGAACAGTCCGAAAT 4785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740151765299274