Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq2057 109 4e-18
seq4876 107 1e-17
seq281 107 1e-17
seq637 93.3 3e-13
>seq2057
Length=8825
Score = 109 bits (120), Expect = 4e-18
Identities = 473/743 (64%), Gaps = 4/743 (1%)
Strand=Plus/Minus
Query 282140 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 282199
||| | |||| ||||||||||| || | ||| | | || || | || || |||
Sbjct 8535 TCTTTCTTATGCTTTCTCTTGAATTCGTTAACGAAGTGGTTAACGAGTCTGTTGTCGAAA 8476
Query 282200 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 282259
|| ||||| ||||| | ||||| |||| || | | |||| || | || || ||
Sbjct 8475 TCCTCACCACCCAAGTGAGTATCACCTGCAGTGGACTTGACTTCAAAGATACCCTCCTCG 8416
Query 282260 AGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319
| | ||| || | ||||| ||||| ||||| | |||||| || || |||||
Sbjct 8415 ATGGTCAAGAGTGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACATTTCGC 8356
Query 282320 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 282379
|| || || || || ||||| || |||| || || || || || || |||||
Sbjct 8355 TCACCCTCAACCTTCTTGTCCAGACCGTAGGCAATGGCGGCCGCGGTAGGCTCGTTAATG 8296
Query 282380 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 282439
|| | | ||| || || ||||| || || ||||| || |||||||| | |||||||
Sbjct 8295 ATACGGAGAACGTTGAGGCCAGCGATCAGACCGGCATCCTTGGTGGCTTGACGTTGTGAA 8236
Query 282440 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATAAGC 282498
||| | || ||||| || || || | ||||| | |||| || | |||| |||||
Sbjct 8235 TCGGTGAAGTATGCTGGGACTGTGACGACGGCGT-TGTTGACGGTTCCACCAAGGTAAGC 8177
Query 282499 GCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG 282558
|| || | | |||| || || ||||| || || |||| ||||| | ||||
Sbjct 8176 CTCGGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATTTCCTCTGGTGTGAATTG 8117
Query 282559 CTTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTT 282617
||| ||| |||| | | || | | | || || |||| | | ||
Sbjct 8116 CTTCTTCTCACCCTTGAACTCAATCTCGACGACA-GGCTTTCCACCACGGTCGAGGACGG 8058
Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677
| || || | | |||||||| | || || ||||| || | || || || |
Sbjct 8057 TGAAAGGGAAGTGCTTCATATCGGCCTGGACCTCCTGGTCTGCGAACTTTCGTCCGATCA 7998
Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737
|| ||||| || || | || |||| || || | || | || | || || ||||
Sbjct 7997 GACGCTTTGCGTCGAAGACTGTGTTGGCGGGGTTCATGGCGACCTGGTTCTTTGCGGCAT 7938
Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797
|||| |||||| | || || ||||| || | ||| | || || || || || || || |
Sbjct 7937 CTCCGATCAGACGCTCGGTATCTGTGAAGGCAACGAAGGAAGGGGTAGTTCGGTTTCCCT 7878
Query 282798 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTG 282857
| || || || ||||| |||| | | ||| | | | ||||||||| | || |
Sbjct 7877 GGTCGTTGGCGATAATCTCAATTCGATCATCACGGTAGATACCTACACAGGAGTAGGTGG 7818
Query 282858 TTCCTAAATCAATACCAATAGCA 282880
|||| | ||| ||||| || |||
Sbjct 7817 TTCCAAGATCGATACCTATGGCA 7795
>seq4876
Length=3815
Score = 107 bits (118), Expect = 1e-17
Identities = 255/383 (67%), Gaps = 3/383 (1%)
Strand=Plus/Minus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
|||| || || | ||| || |||||||| | ||| || || || || ||||| |||||
Sbjct 614 GCAGAGACGTTCATAATTCCGTTGGCATCAACATCGAAGGTAACCTCGATTTGTGGGACA 555
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| | | ||||||||||| || | | ||| | |||| | || || || ||
Sbjct 554 CCACGTGGTGCAGGTGGGATACCAGTAAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTG 495
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605
||| || || ||||||||||| | ||||||| || ||| ||| || || || |
Sbjct 494 GTGCGTTGACGCTCACCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAG 435
Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665
|| | || || ||| || || || || || |||||||| |||| ||||||
Sbjct 434 GTGGAGAAGACCTCGGACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATAAGCTTGGTC 375
Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725
|| ||||||||| || || | ||| ||||| | || | |||||| | |||| ||
Sbjct 374 ATTTGACCACCAGCAGTCTCGATACCGAGAGACAATGGCGCGACATCGAGGAGGAGGATC 315
Query 281726 T--TTTGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782
| || | | || | | || | || ||||| || || || | ||||||||
Sbjct 314 TCGTTGGTGGACTTGGAAGAGGTGTCTCCGGAGAGAATGGCAGCCTGGACGGCAGCACCG 255
Query 281783 TATGCAACAGCTTCATCAGGATT 281805
|| ||||||||||||||||| ||
Sbjct 254 TAGGCAACAGCTTCATCAGGGTT 232
>seq281
Length=21818
Score = 107 bits (118), Expect = 1e-17
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394
|| ||||| ||||| |||| |||||||||||||| || || | | ||||| ||| |||
Sbjct 9564 TTCTCAAGTCCATATGCAAGCGCAGCAGCAGTTGGCTCGTTGACCACTCTCAGAACGTTA 9623
Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454
||||| |||||| || ||||| || |||||||| | |||||||||||| || || ||
Sbjct 9624 AGACCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTAAGCT 9683
Query 282455 GGAACAGTAATAACGGC 282471
|| || || | ||| ||
Sbjct 9684 GGGACTGTGACAACAGC 9700
>seq637
Length=16155
Score = 93.3 bits (102), Expect = 3e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192
|| ||||||||||| | |||||||||||||||||| | || | || || | || |||
Sbjct 4645 GAGTTTTTCTTCCACGCCATGGCTGGTCGTGAAGGTCTCATCGACACTGCAGTAAAGACT 4704
Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252
|| || ||||||||||||||| | |||||||| ||||||||| | | ||
Sbjct 4705 GCCGAAACTGGTTATATTCAACGTCGTCTTGTCAAAGCACTTGAAGATGTCATTGCCAAA 4764
Query 435253 TATGATGGTACAGTGAGAAAT 435273
|||||||| ||||| |||||
Sbjct 4765 TATGATGGAACAGTCCGAAAT 4785
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740151765299274
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |