Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 91.5 1e-13
>seq1973
Length=9094
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | ||| ||| || || || ||||| |||| | || ||| | ||||| |
Sbjct 6341 AAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCA-TCCTCCAA 6283
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|||||||| ||| |||| | ||||| || || || || || || ||||| || |||
Sbjct 6282 TTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGGAT 6223
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
|||| ||||| | |||| ||||| | | ||| || || | || | || |||||
Sbjct 6222 CTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCC 6163
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||||||| || ||||| ||||||||
Sbjct 6162 GGTCAGAGTCTTAACGAAGATCTGCAT 6136
Score = 86.0 bits (94), Expect = 6e-12
Identities = 125/175 (71%), Gaps = 4/175 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521
|| ||||| ||||| || |||||||| || | | |||| |||||||||||||| |
Sbjct 5592 GTCGACTCCTTCTGAATGTTGTAATCAG--ATAGAGTACGACCATCCTCGAGCTGCTTTC 5535
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || | || |||||||| || ||||| || |||||||| |||||| ||
Sbjct 5534 CGGCAAAGATCAAGCGTTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCT 5475
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||| | || | ||||| | | ||| || |||| ||||| ||| || |||||
Sbjct 5474 TGACGTTGTCTATGGTGTCCGACGACTCTACCTCGAGGGTGATGGTCTTACCGGT 5420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483361889132760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |