Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1973 91.5 1e-13 >seq1973 Length=9094 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||| || || || ||||| |||| | || ||| | ||||| | Sbjct 6341 AAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCA-TCCTCCAA 6283 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| |||| | ||||| || || || || || || ||||| || ||| Sbjct 6282 TTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGGAT 6223 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||||| | |||| ||||| | | ||| || || | || | || ||||| Sbjct 6222 CTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCC 6163 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||| || ||||| |||||||| Sbjct 6162 GGTCAGAGTCTTAACGAAGATCTGCAT 6136 Score = 86.0 bits (94), Expect = 6e-12 Identities = 125/175 (71%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 || ||||| ||||| || |||||||| || | | |||| |||||||||||||| | Sbjct 5592 GTCGACTCCTTCTGAATGTTGTAATCAG--ATAGAGTACGACCATCCTCGAGCTGCTTTC 5535 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | || |||||||| || ||||| || |||||||| |||||| || Sbjct 5534 CGGCAAAGATCAAGCGTTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCT 5475 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | || | ||||| | | ||| || |||| ||||| ||| || ||||| Sbjct 5474 TGACGTTGTCTATGGTGTCCGACGACTCTACCTCGAGGGTGATGGTCTTACCGGT 5420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483361889132760