Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1315 104 6e-17 >seq1315 Length=11532 Score = 104 bits (114), Expect = 6e-17 Identities = 500/787 (64%), Gaps = 21/787 (3%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || || |||||||| || ||||| || | ||| | || ||| || ||||| ||||| Sbjct 1235 TACTTCGGTTTCAAGACCCTTGAGCGATCATATCTCCTCCGTCTCGATGGCAAGATCTGC 1176 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| ||||| ||| || | ||||| || | || || || || | |||||| | Sbjct 1175 GAACGTCCACAACATATGATTATGCGTGTCGCTGTCGGAATCCACGGTGAGGATATTGAG 1116 Query 110424 GCTGTTATTGAATGTTA-----TGATGTATTAAGTAAAAAGAAAGCT--ATTCATGCTAC 110476 |||| || || || |||||| || ||| | || | || || | Sbjct 1115 GCTGCCATCGAGACCTACAACTTGATGTCC--AGCAAATA-----CTTCACCCACGCCTC 1063 Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGG 110536 || || || || || || || || |||| | | || ||||| ||| | | Sbjct 1062 ACCAACACTTTTCGCTGCTGGTACACCACAAGCACAACTTTCATCATGCTTCCTTATCGA 1003 Query 110537 AATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTT 110595 || || || || ||||| ||||| ||||| | || |||| ||| | |||| Sbjct 1002 CATGAAGGAGGACAGCATTGATGGTATCTATGACACA-TTGAAGATTTGTGCCATGATTT 944 Query 110596 CTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATA 110655 | || ||| |||| || |||||| | | ||||| || || ||| || || | | Sbjct 943 CAAAGAACGCTGGTGGTATTGGTCTCAATGTTCACAGAATCCGTGCAACCGGTGCTTACA 884 Query 110656 TCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGAC 110714 | || | || || || |||| ||| | ||||| ||| | |||| |||||| || Sbjct 883 TTGCTGGTACAAACGGAAACTCCAAC-GGAATCGTTCCTATGCTTCGAGTTTTCAACAAC 825 Query 110715 ACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTC 110771 || || |||||| ||||||||||| ||| | ||| | || || || || || Sbjct 824 ACCGCCCGATATGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCTTTCGCCATTTACCTT 765 Query 110772 GAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAA 110831 || || ||||| | ||| | || || ||| | || || || || || || ||| || Sbjct 764 GAGCCATGGCACGCTGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAG 705 Query 110832 GAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGT 110891 || | || |||||| | || || || | |||||| ||||| | |||||||| ||| Sbjct 704 GAGGTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTCTTCATGAAGCGT 645 Query 110892 GTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGAT 110951 ||| || | || | ||| | | ||||| ||| | | |||||| | | || Sbjct 644 GTTGAAAAGAACCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGCTTGGCCGAC 585 Query 110952 GTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGC 111011 || || || | ||||| || | | || || ||||| || || |||||| ||| Sbjct 584 GTCTACGGTGACGAGTTCGAGGCTTTGTATGAGAAATACGAGTCTGAGGGCAAGGGTCGT 525 Query 111012 AAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGA 111071 ||| || || ||| | ||||||| | ||||| || | ||| ||| || ||| Sbjct 524 AAAAGCATCAAGGCCCAAAAGCTTTGGTACTCTATCCTCGAGGCTCAAACTGAGACCGGA 465 Query 111072 ACTCCTT 111078 | |||| Sbjct 464 AACCCTT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186664556325789