Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 96.9 2e-15
>seq1973
Length=9094
Score = 96.9 bits (106), Expect = 2e-15
Identities = 150/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||||||| | ||||||||| ||||| |||||||| ||| ||| || || | || ||
Sbjct 6345 CACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCATCCTC 6286
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
|||||| || ||||| |||||||| ||||| ||||| | || | ||| || || ||
Sbjct 6285 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTG 6226
Query 33660 AATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
|| || || | |||| ||| ||||| || || || || | || || || |
Sbjct 6225 GATCTT-TGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCT 6167
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || | || || || ||||||||||||
Sbjct 6166 TGCCGGTCAGAGTCTTAACGAAGATCTGCATA 6135
Score = 84.2 bits (92), Expect = 1e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | |||||||| || || ||| || || || ||||| |||||
Sbjct 6135 ACCACCACGGAGACGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGA 6076
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||||||||| |||| || | ||| || ||||| ||||| | ||||| ||||| | ||
Sbjct 6075 GAGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGG 6016
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| || || || || || || | |||| || | ||||| ||||| |
Sbjct 6015 AATACCCTCCTTATCCTGGATCTT-TGACTTGACATTATCAATTGTGTCTGAAGATTCGA 5957
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| || || || || | || || || ||||| ||||||
Sbjct 5956 CCTCGAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCATA 5907
Score = 82.4 bits (90), Expect = 5e-11
Identities = 150/217 (69%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | ||||| || || || ||| || || || ||||| |||||
Sbjct 5907 ACCACCACGGAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGA 5848
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||||||||| |||| || | ||| || |||||||| || | ||||| || || | ||
Sbjct 5847 GAGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGTCCGGTGG 5788
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || || ||||| ||| ||| | | |||| ||| | ||| || || ||||| |
Sbjct 5787 GATGCCCTCCTTGTCCTGAATCTTC-GACTTGACATTGTCGATGGTATCACTGGATTCGA 5729
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
| || | ||||| || || || || || || || ||
Sbjct 5728 CTTCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGAC 5692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328664944726080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |