Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 140 5e-27
>seq2965
Length=6591
Score = 140 bits (154), Expect = 5e-27
Identities = 208/291 (71%), Gaps = 13/291 (4%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || |||||||| || || || ||||||||||| ||| | || |
Sbjct 5401 GATCTGGCAAATGTAC-AAGAAGGCCGAAGCTTCTTTCTGGACCGCCGAAGAGATTGATC 5459
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887
| | || |||| ||||| ||| | ||| ||||| ||| | |||
Sbjct 5460 TTTCCAAGGATCTCCACG----ACTGGAACAACAAGCTCAACGATGACGAACGCTACTTC 5515
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| ||||||||||| ||| ||||| ||| ||| || || || |||||||||
Sbjct 5516 ATCTCCCACGTCCTCGC-TTTCTTCGCTGCCTCCGACGGAATTGTCAACGAGAACCTCCT 5574
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
|| ||||| | | || |||||| | |||||||| || || || ||||| ||||| ||
Sbjct 5575 CGAGCGCTTCAGCAGTGAAGTCCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAAT 5634
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTA 1456058
| || || |||||||||||||| || ||||| ||||| ||||| |||||
Sbjct 5635 CATGATGGAGAACATCCACTCTGAGACATACTCCCTCCTCATCGATACCTA 5685
Score = 87.8 bits (96), Expect = 3e-11
Identities = 180/261 (69%), Gaps = 5/261 (2%)
Strand=Plus/Plus
Query 1456515 CCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGC 1456574
|||||| | ||||| |||||| || ||||| ||| ||||||| | | ||| | || |
Sbjct 6058 CCAAGCCG-TCATCACCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACTGAGGCTCTTC 6116
Query 1456575 CGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGC 1456634
| || || ||||||||||||||| | | ||| || ||||||| | || |||||
Sbjct 6117 CTTGTGCTCTTCTCGGCATGAACGCCAAC-TTGATGAAGCAATACATTG-AGTTCGTCGC 6174
Query 1456635 CGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCC 1456694
|| || || ||| | ||||| | || ||| ||| | |||||||| |||
Sbjct 6175 TGATCGGCTCCTCCTCTCTCTCGG-TAATGAAAAGGTTTACAAGGTTGCCAACCCATTCG 6233
Query 1456695 CATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-G 1456753
| |||||| ||||| |||| || ||||||||||| |||||| || || || |
Sbjct 6234 ACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCTG 6293
Query 1456754 AGTACGCCAAGGCCGGCGTCA 1456774
| ||| |||||||| ||||
Sbjct 6294 ATTACCAAAAGGCCGGTGTCA 6314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7176870891031338
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |