Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2965 140 5e-27 >seq2965 Length=6591 Score = 140 bits (154), Expect = 5e-27 Identities = 208/291 (71%), Gaps = 13/291 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||| || || || ||||||||||| ||| | || | Sbjct 5401 GATCTGGCAAATGTAC-AAGAAGGCCGAAGCTTCTTTCTGGACCGCCGAAGAGATTGATC 5459 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| ||| | ||| ||||| ||| | ||| Sbjct 5460 TTTCCAAGGATCTCCACG----ACTGGAACAACAAGCTCAACGATGACGAACGCTACTTC 5515 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||||||||||| ||| ||||| ||| ||| || || || ||||||||| Sbjct 5516 ATCTCCCACGTCCTCGC-TTTCTTCGCTGCCTCCGACGGAATTGTCAACGAGAACCTCCT 5574 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | | || |||||| | |||||||| || || || ||||| ||||| || Sbjct 5575 CGAGCGCTTCAGCAGTGAAGTCCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAAT 5634 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTA 1456058 | || || |||||||||||||| || ||||| ||||| ||||| ||||| Sbjct 5635 CATGATGGAGAACATCCACTCTGAGACATACTCCCTCCTCATCGATACCTA 5685 Score = 87.8 bits (96), Expect = 3e-11 Identities = 180/261 (69%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 1456515 CCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGC 1456574 |||||| | ||||| |||||| || ||||| ||| ||||||| | | ||| | || | Sbjct 6058 CCAAGCCG-TCATCACCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACTGAGGCTCTTC 6116 Query 1456575 CGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGC 1456634 | || || ||||||||||||||| | | ||| || ||||||| | || ||||| Sbjct 6117 CTTGTGCTCTTCTCGGCATGAACGCCAAC-TTGATGAAGCAATACATTG-AGTTCGTCGC 6174 Query 1456635 CGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCC 1456694 || || || ||| | ||||| | || ||| ||| | |||||||| ||| Sbjct 6175 TGATCGGCTCCTCCTCTCTCTCGG-TAATGAAAAGGTTTACAAGGTTGCCAACCCATTCG 6233 Query 1456695 CATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-G 1456753 | |||||| ||||| |||| || ||||||||||| |||||| || || || | Sbjct 6234 ACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCTG 6293 Query 1456754 AGTACGCCAAGGCCGGCGTCA 1456774 | ||| |||||||| |||| Sbjct 6294 ATTACCAAAAGGCCGGTGTCA 6314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176870891031338