Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 111 2e-19
seq47 89.7 5e-13
seq231 82.4 8e-11
>seq1973
Length=9094
Score = 111 bits (122), Expect = 2e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 134523 TCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAA 134582
|||||||||||||||||||||| | ||| || || || | || ||||| || |||
Sbjct 6326 TCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCATCCTCCAATTGCTTGCCGGCGAAA 6267
Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642
||||| ||||| ||||| || || || || || || || || || ||| |||||
Sbjct 6266 ATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 6207
Query 134643 TCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702
|| | |||||| || || || || || | ||||| || || ||||| | ||| ||||||
Sbjct 6206 TCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAACG 6147
Query 134703 AAAATTTGCAT 134713
|| || |||||
Sbjct 6146 AAGATCTGCAT 6136
Score = 100 bits (110), Expect = 3e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|||||||| || || || ||||| ||||||||||| || | || || || |||
Sbjct 5604 ACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGATAGAGTACGACCATCCTCG 5545
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| || || ||||| ||||| || ||||| || || || || || || || || ||
Sbjct 5544 AGCTGCTTTCCGGCAAAGATCAAGCGTTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 5485
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || ||||| ||| | ||||| ||||| || || ||||| || ||||| |||
Sbjct 5484 ATCTTGCTCTTGACGTTGTCTATGGTGTCCGACGACTCTACCTCGAGGGTGATGGTCTTA 5425
Query 134685 CCGGT 134689
|||||
Sbjct 5424 CCGGT 5420
>seq47
Length=33200
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545
|||||| | || || || ||||| || || || || ||||| || |||||||||||
Sbjct 24307 TCCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 24248
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
|| ||| | ||| ||||| || || || || || ||||||||||| ||||| || ||
Sbjct 24247 AAGGGTACGTCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTGG 24188
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| || || || || ||||| || || || || | ||||| || || || ||
Sbjct 24187 AATTCCCTCCTTGTCCTGAATCTTGGACTTAACATTATCGATGGTGTCCGAAGACTCAAC 24128
Query 134666 GTCGAGAGTAATGGTTTTACCGGT 134689
|| || || ||||| || || ||
Sbjct 24127 CTCTAGGGTGATGGTCTTGCCCGT 24104
>seq231
Length=23011
Score = 82.4 bits (90), Expect = 8e-11
Identities = 129/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 134524 CCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAA 134582
||||||| || || ||||| | ||| |||| | || ||||| || || || || ||
Sbjct 15342 CCTTTTGGATATTATAGTCTGACAA-GGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAG 15400
Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642
||||||||||| ||||| || || || || || || || || || || ||||| |
Sbjct 15401 ATCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 15460
Query 134643 TCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702
|| | ||||| || || || || || || |||||||| ||||| || | || || |||
Sbjct 15461 TCGATAGTGTCCGAAGACTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTCTTGACG 15520
Query 134703 AA 134704
||
Sbjct 15521 AA 15522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505336810887480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |