Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1315 212 9e-50 seq5294 93.3 6e-14 >seq1315 Length=11532 Score = 212 bits (234), Expect = 9e-50 Identities = 522/787 (66%), Gaps = 20/787 (3%) Strand=Plus/Plus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || || ||||| | || || |||||| ||| || || ||||||||||| || || Sbjct 399 GATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAA 458 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAAC-----GACCCTAGCA 69465 || | || || ||| | |||| |||| ||||| | ||||| | ||| | Sbjct 459 AGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGAT 518 Query 69466 TTTATTACGGTC-TTG---TAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAA 69521 | ||||| | ||| | | || | ||| ||||| | |||| ||||| Sbjct 519 GCTTTTACGACCCTTGCCCTCAGACTCGTATTTCTCATAC-------AAAGCC--TCGAA 569 Query 69522 TTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACAC 69581 || || || | || || |||| |||||||| || || || |||||||||| ||| | Sbjct 570 CTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGCACATCAATGTCCAGTC 629 Query 69582 ATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATC 69641 | | | ||| || ||||| || ||||| |||||||| ||||| |||||||| Sbjct 630 GAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATC 689 Query 69642 TCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATC 69701 | || | | || || ||||| || ||| || ||||| ||||| | || ||| Sbjct 690 ACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATC 749 Query 69702 AGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATC 69761 || |||||||| || || || || || | | || || || || || || || ||||| Sbjct 750 AGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACGCTTGTTACCACCTTGATC 809 Query 69762 TATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACC 69821 | |||| ||| ||||| || | |||| ||||| |||| || || || || || || Sbjct 810 AACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATTCCGTTGGAGTTTCC 869 Query 69822 ATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCC 69881 ||||| |||| ||| ||| || |||| || || | || | ||||| || || Sbjct 870 GTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTGAACATTGAGACCAATACC 929 Query 69882 TCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCT 69941 || || | || || || | |||||| |||||||||||||| ||||| || ||||| Sbjct 930 ACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTGTCATAGATACCATCAATGCT 989 Query 69942 ATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATT 70001 || || |||||| | ||| || || || | ||| ||| || || ||| Sbjct 990 GTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGTGCTTGTGGTGTACCAGCAGC 1049 Query 70002 AAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061 || | ||| || || ||||| ||||| |||| || | || ||||| || || || Sbjct 1050 GAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGACATCAAGTTGTAGGTCTCGAT 1109 Query 70062 AGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAG 70120 || | || |||||| ||| | || ||||| | ||||||||||| | |||||| || | Sbjct 1110 GGCAGCCTCAATATCCTCACCG-TGGATTCCGACAGCGACACGCATAATCATATGTTGTG 1168 Query 70121 GTCGTTC 70127 | ||||| Sbjct 1169 GACGTTC 1175 >seq5294 Length=3402 Score = 93.3 bits (102), Expect = 6e-14 Identities = 313/485 (65%), Gaps = 7/485 (1%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || ||||| || |||| || || | ||||||| ||||||||||| || || || ||| Sbjct 641 GTGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGA 582 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||| || |||||||||||| || | || |||| || || Sbjct 581 CCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTCATG 522 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || || ||||| |||||| ||| || || || || || | || || ||||| | | | Sbjct 521 TGGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAACA 462 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | ||| | |||||||||| |||||| | | ||||||||| |||| | | Sbjct 461 ATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGATG 402 Query 68614 CTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | |||||| || ||||||||||||| || || ||||| || | ||| | Sbjct 401 TTTGGAACATTTTGGATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTATCGGAC 342 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || | | | || | | | | || || || || || | ||| || || ||| Sbjct 341 CAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCCA 282 Query 68731 G--ATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTC 68788 | | ||||| | |||| ||| || || ||| ||||| || | | || || || Sbjct 281 GCAAGAACACGC--CGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAATC 224 Query 68789 CCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 68848 | || || ||| ||| |||||||||||||| || || | ||||| || | | || Sbjct 223 CAAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATAC 164 Query 68849 CATGT 68853 | ||| Sbjct 163 CGTGT 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686825091576360