Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 212 9e-50
seq5294 93.3 6e-14
>seq1315
Length=11532
Score = 212 bits (234), Expect = 9e-50
Identities = 522/787 (66%), Gaps = 20/787 (3%)
Strand=Plus/Plus
Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410
||| || || ||||| | || || |||||| ||| || || ||||||||||| || ||
Sbjct 399 GATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAA 458
Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAAC-----GACCCTAGCA 69465
|| | || || ||| | |||| |||| ||||| | ||||| | ||| |
Sbjct 459 AGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGAT 518
Query 69466 TTTATTACGGTC-TTG---TAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAA 69521
| ||||| | ||| | | || | ||| ||||| | |||| |||||
Sbjct 519 GCTTTTACGACCCTTGCCCTCAGACTCGTATTTCTCATAC-------AAAGCC--TCGAA 569
Query 69522 TTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACAC 69581
|| || || | || || |||| |||||||| || || || |||||||||| ||| |
Sbjct 570 CTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGCACATCAATGTCCAGTC 629
Query 69582 ATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATC 69641
| | | ||| || ||||| || ||||| |||||||| ||||| ||||||||
Sbjct 630 GAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATC 689
Query 69642 TCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATC 69701
| || | | || || ||||| || ||| || ||||| ||||| | || |||
Sbjct 690 ACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATC 749
Query 69702 AGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATC 69761
|| |||||||| || || || || || | | || || || || || || || |||||
Sbjct 750 AGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACGCTTGTTACCACCTTGATC 809
Query 69762 TATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACC 69821
| |||| ||| ||||| || | |||| ||||| |||| || || || || || ||
Sbjct 810 AACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATTCCGTTGGAGTTTCC 869
Query 69822 ATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCC 69881
||||| |||| ||| ||| || |||| || || | || | ||||| || ||
Sbjct 870 GTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTGAACATTGAGACCAATACC 929
Query 69882 TCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCT 69941
|| || | || || || | |||||| |||||||||||||| ||||| || |||||
Sbjct 930 ACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTGTCATAGATACCATCAATGCT 989
Query 69942 ATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATT 70001
|| || |||||| | ||| || || || | ||| ||| || || |||
Sbjct 990 GTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGTGCTTGTGGTGTACCAGCAGC 1049
Query 70002 AAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061
|| | ||| || || ||||| ||||| |||| || | || ||||| || || ||
Sbjct 1050 GAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGACATCAAGTTGTAGGTCTCGAT 1109
Query 70062 AGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAG 70120
|| | || |||||| ||| | || ||||| | ||||||||||| | |||||| || |
Sbjct 1110 GGCAGCCTCAATATCCTCACCG-TGGATTCCGACAGCGACACGCATAATCATATGTTGTG 1168
Query 70121 GTCGTTC 70127
| |||||
Sbjct 1169 GACGTTC 1175
>seq5294
Length=3402
Score = 93.3 bits (102), Expect = 6e-14
Identities = 313/485 (65%), Gaps = 7/485 (1%)
Strand=Plus/Minus
Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433
|| ||||| || |||| || || | ||||||| ||||||||||| || || || |||
Sbjct 641 GTGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGA 582
Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493
|| | |||| || |||||||||||| || | || |||| || ||
Sbjct 581 CCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTCATG 522
Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553
|| || ||||| |||||| ||| || || || || || | || || ||||| | | |
Sbjct 521 TGGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAACA 462
Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613
|| | ||| | |||||||||| |||||| | | ||||||||| |||| | |
Sbjct 461 ATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGATG 402
Query 68614 CTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670
| | |||||| || ||||||||||||| || || ||||| || | ||| |
Sbjct 401 TTTGGAACATTTTGGATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTATCGGAC 342
Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730
|| | | | || | | | | || || || || || | ||| || || |||
Sbjct 341 CAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCCA 282
Query 68731 G--ATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTC 68788
| | ||||| | |||| ||| || || ||| ||||| || | | || || ||
Sbjct 281 GCAAGAACACGC--CGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAATC 224
Query 68789 CCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 68848
| || || ||| ||| |||||||||||||| || || | ||||| || | | ||
Sbjct 223 CAAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATAC 164
Query 68849 CATGT 68853
| |||
Sbjct 163 CGTGT 159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686825091576360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |