Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 131 1e-25
>seq1973
Length=9094
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|||||||| | ||||| || || || |||||||||||| | |||| |||| |||
Sbjct 6116 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCCTCG 6057
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| || || |||||| ||||||| |||||||||||||| || | |||||| ||||| |
Sbjct 6056 AGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGG 5997
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
||||| || | | || | ||||||| | ||| || || ||||| || | |||
Sbjct 5996 ATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTCGACCTCGAGAGTGATGGTCTTG 5937
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || ||||| || || ||||||||||||
Sbjct 5936 CCGGTAAGAGTCTTGACGAAGATTTGCATA 5907
Score = 111 bits (122), Expect = 1e-19
Identities = 165/233 (71%), Gaps = 1/233 (0%)
Strand=Plus/Minus
Query 27017 ATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGT 27075
|||| ||||| || | || | |||||||| || || || |||||||| |||||||
Sbjct 6367 ATTGTCCTCCACGAAGGCGAAGCACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGT 6308
Query 27076 CGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCG 27135
|||| | | | || | || || | || || |||||| |||| | |||||||||||||
Sbjct 6307 CGCTGAGGGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCG 6248
Query 27136 GCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTT 27195
| || | |||||| ||||| |||||| || | | || | ||||| | | |
Sbjct 6247 GTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACT 6188
Query 27196 CAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
||||||| | || |||| ||||| |||||||| || || ||||| ||||||
Sbjct 6187 CAACTTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCATA 6135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424883911020888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |