Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 286 4e-72
seq136 131 2e-25
seq2965 107 2e-18
seq2230 84.2 3e-11
>seq1315
Length=11532
Score = 286 bits (316), Expect = 4e-72
Identities = 744/1117 (67%), Gaps = 33/1117 (3%)
Strand=Plus/Plus
Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110
|||| || |||||||| || || | | ||||||||||||| || | ||| ||||| |
Sbjct 134 CATCAGCAAGACCTTGGACGCCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTG 193
Query 111111 CAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 111167
| |||| || || || | || || |||| ||| | |||||| ||||
Sbjct 194 C---CTCAGGAACTGGGTAGTAGTTGACATCGATGATCTTGTTCAAGTTTTTGACGACAA 250
Query 111168 TCTTTGT-GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATAC 111226
||| | || ||| ||||| || | | ||| ||||| ||||| |||| |||||
Sbjct 251 -CTTGGCAGACTTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATAT 309
Query 111227 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 111286
|||| || || | |||||||| ||||||||||| |||||| | ||| ||
Sbjct 310 GTTGGGAGAGCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCG 369
Query 111287 AAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTC 111346
| ||| || ||||| |||||||| ||| || || || | |||||||||||| |||||
Sbjct 370 ACAATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTT 429
Query 111347 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406
|||||| ||||||||||| |||||| | || | || ||||| || || | | |||
Sbjct 430 CGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGG 489
Query 111407 ATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGT-CCCTCCGCCTC 111462
|||| | ||||| | | | | || | ||| || | ||| | ||||| | |||
Sbjct 490 ATAGAGTACCAAAGCTTTTGGGCCTTG----ATGCTTTTACGACCCTTGCCCTCAGACTC 545
Query 111463 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 111522
||| || || | || || ||||| ||||| |||||| | || || ||
Sbjct 546 GTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTC 605
Query 111523 GTCTGGACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTG 111581
|| || || | | | ||| | || ||| ||||| ||||||||||| || ||||
Sbjct 606 GTTAGGGCACATCAATGTCCAGTCGAGGTTCTT-TTCAACACGCTTCATGAAGAGATCTG 664
Query 111582 GAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641
||||||| || | | |||||||| | ||| |||| || | || ||||| ||
Sbjct 665 GAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTC 724
Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701
| | || |||||||| | | ||| ||||||||||||||||| || | |||| || |
Sbjct 725 GGAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCAC 784
Query 111702 CCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 111755
| ||||| ||| |||||| ||||| || || ||| ||| || || ||||
Sbjct 785 C---AGGACGCTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAA 841
Query 111756 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTC 111815
|||| |||| || || | || | || ||||| || ||| || | || |
Sbjct 842 GCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCAC 901
Query 111816 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 111875
| || | | | |||||||| ||||| |||||| || ||||| |
Sbjct 902 GGATTCTGTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCT 961
Query 111876 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGG 111935
| | || |||||||||| | || ||||||||| || ||||||||||||| |
Sbjct 962 TCAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATG 1021
Query 111936 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 111995
| | || | | ||||||||||||| ||| || ||||||| ||||| |||| ||
Sbjct 1022 AAAGTTGTGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAA-GTA- 1079
Query 111996 CTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 112053
||| ||||||| || ||| ||||| | | ||| ||||| || || |||||||| ||
Sbjct 1080 TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTCC 1139
Query 112054 GATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTG 112113
|| ||||| ||||| | ||| | ||||| ||| || |||||||||| || |
Sbjct 1140 GACAGCGACACGCATAATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGACGGAG 1199
Query 112114 AAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149
||||| | || ||||||||| |||| ||| |||||
Sbjct 1200 GAGATATGATC-GCTCAAGGGTCTTGAAACCGAAGTA 1235
>seq136
Length=27106
Score = 131 bits (144), Expect = 2e-25
Identities = 226/327 (69%), Gaps = 20/327 (6%)
Strand=Plus/Plus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
|| |||||||||||||| || | |||||| | || ||||| ||||||||| |
Sbjct 21151 AAACCATCCATCTCGGTTAGAATTTGATTGAGAGTAGCTTCTCGCTCATCATTCCC---- 21206
Query 11600 ATACCACCA---GCACTG---------CGTTGCTTGCCCACCGCATCAATCTCATCAATG 11647
||||||| | || | || ||| || | ||||| || |||||||||
Sbjct 21207 --ACCACCAAATGAACCGGCCTTTCCACGAGCCTTTCCAATGGCATCGATTTCATCAATG 21264
Query 11648 AAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCA 11707
|||| |||||| || ||| | | ||| || |||||||||| ||||| || ||||
Sbjct 21265 AAGATAATACAAGGGGTATTCTTTCTGGCCATAGCAAAGAGATCTCGAACTCTGGAGGCA 21324
Query 11708 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG-CACTGGATGAATGGGACATT 11766
|| ||||||||||||||||||||||| | | || | |||| || ||| || |||
Sbjct 21325 CCAACACCAACAAACATCTCCACAAACTCGGAACCACTGACACT-GAAGAAAGGTACACC 21383
Query 11767 TGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAG 11826
|||||| || || |||| || || | ||||| || ||||| || ||| | ||
Sbjct 21384 TGATTCTCCAGCTGTGGCCTTTGCTAGTAAAGTCTTACCAGTACCAGGTGGACCAGAAAG 21443
Query 11827 AAGGGCGCCTCGGGGGATCTTGGCACC 11853
|| ||| ||||| || ||||| |||||
Sbjct 21444 AATGGCTCCTCGAGGAATCTTAGCACC 21470
>seq2965
Length=6591
Score = 107 bits (118), Expect = 2e-18
Identities = 291/445 (65%), Gaps = 8/445 (2%)
Strand=Plus/Minus
Query 122378 CGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAA 122437
|||| |||||||| |||||||||||||| || | || ||||| ||||| ||||| |
Sbjct 6290 CGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTCTCCATGAAGTCGA 6231
Query 122438 ATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACA 122497
|||| || | || ||| | || | |||||| ||||| | |
Sbjct 6230 ATGGGTTGGCAACCTTGTAAACCTTTTCATTACCGAGAGAGAGGAGGAGCCGATCAGCGA 6171
Query 122498 CATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGTG 122557
| |||||||||| | |||| | | |||||| |||| || ||| || || |
Sbjct 6170 CGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGAGCACAAGGAAGAG 6111
Query 122558 CGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTT 122617
| || | |||| ||| |||||||||||| ||||| | | || ||| |||| | |
Sbjct 6110 CCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCTTGGACTGCTG 6051
Query 122618 CGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA----AACTCCTGGTGG 122673
| || | || | || ||| |||||| | |||| || || ||||
Sbjct 6050 CCTTACTTGGGCGATGCTTCAAGTGGGAGAAGAG----AAGGCATGCGAAGTCGGTGTGG 5995
Query 122674 AGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGC 122733
|||||||| || ||||| || | || || |||||| ||||| | |||||| || |||
Sbjct 5994 AGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGC 5935
Query 122734 TTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCA 122793
||||||||||| | || | ||| || || ||||||||||||||| || |||
Sbjct 5934 TTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACGGCAGCA 5875
Query 122794 AACGCAAAAAGGCGTTCGGCGAAGG 122818
|| |||| || |||| || ||||
Sbjct 5874 AAGGCAACGAGACGTTGAGCAAAGG 5850
>seq2230
Length=8342
Score = 84.2 bits (92), Expect = 3e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723
||||| |||||| ||||||| ||| ||||||||||| | |||||||| ||||| ||
Sbjct 8342 GGTGTAATTGATGCCGACTACCGCGGTCAAGTCAAAGTCCTCCTCTTCAACCACGGTGAG 8283
Query 164724 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAG 164774
||||| || ||||| ||| | || ||||| | || ||| | ||| | |||
Sbjct 8282 AAAGATTTCGAGGTCAAGGAGGGAGATCGTGTAGCTCAATTGGTCTTGGAG 8232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627955466450400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |