Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1315 286 4e-72 seq136 131 2e-25 seq2965 107 2e-18 seq2230 84.2 3e-11 >seq1315 Length=11532 Score = 286 bits (316), Expect = 4e-72 Identities = 744/1117 (67%), Gaps = 33/1117 (3%) Strand=Plus/Plus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| || |||||||| || || | | ||||||||||||| || | ||| ||||| | Sbjct 134 CATCAGCAAGACCTTGGACGCCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTG 193 Query 111111 CAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 111167 | |||| || || || | || || |||| ||| | |||||| |||| Sbjct 194 C---CTCAGGAACTGGGTAGTAGTTGACATCGATGATCTTGTTCAAGTTTTTGACGACAA 250 Query 111168 TCTTTGT-GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATAC 111226 ||| | || ||| ||||| || | | ||| ||||| ||||| |||| ||||| Sbjct 251 -CTTGGCAGACTTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATAT 309 Query 111227 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 111286 |||| || || | |||||||| ||||||||||| |||||| | ||| || Sbjct 310 GTTGGGAGAGCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCG 369 Query 111287 AAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTC 111346 | ||| || ||||| |||||||| ||| || || || | |||||||||||| ||||| Sbjct 370 ACAATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTT 429 Query 111347 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406 |||||| ||||||||||| |||||| | || | || ||||| || || | | ||| Sbjct 430 CGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGG 489 Query 111407 ATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGT-CCCTCCGCCTC 111462 |||| | ||||| | | | | || | ||| || | ||| | ||||| | ||| Sbjct 490 ATAGAGTACCAAAGCTTTTGGGCCTTG----ATGCTTTTACGACCCTTGCCCTCAGACTC 545 Query 111463 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 111522 ||| || || | || || ||||| ||||| |||||| | || || || Sbjct 546 GTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTC 605 Query 111523 GTCTGGACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTG 111581 || || || | | | ||| | || ||| ||||| ||||||||||| || |||| Sbjct 606 GTTAGGGCACATCAATGTCCAGTCGAGGTTCTT-TTCAACACGCTTCATGAAGAGATCTG 664 Query 111582 GAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641 ||||||| || | | |||||||| | ||| |||| || | || ||||| || Sbjct 665 GAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTC 724 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 | | || |||||||| | | ||| ||||||||||||||||| || | |||| || | Sbjct 725 GGAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCAC 784 Query 111702 CCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 111755 | ||||| ||| |||||| ||||| || || ||| ||| || || |||| Sbjct 785 C---AGGACGCTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAA 841 Query 111756 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTC 111815 |||| |||| || || | || | || ||||| || ||| || | || | Sbjct 842 GCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCAC 901 Query 111816 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 111875 | || | | | |||||||| ||||| |||||| || ||||| | Sbjct 902 GGATTCTGTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCT 961 Query 111876 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGG 111935 | | || |||||||||| | || ||||||||| || ||||||||||||| | Sbjct 962 TCAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATG 1021 Query 111936 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 111995 | | || | | ||||||||||||| ||| || ||||||| ||||| |||| || Sbjct 1022 AAAGTTGTGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAA-GTA- 1079 Query 111996 CTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 112053 ||| ||||||| || ||| ||||| | | ||| ||||| || || |||||||| || Sbjct 1080 TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTCC 1139 Query 112054 GATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTG 112113 || ||||| ||||| | ||| | ||||| ||| || |||||||||| || | Sbjct 1140 GACAGCGACACGCATAATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGACGGAG 1199 Query 112114 AAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||||| | || ||||||||| |||| ||| ||||| Sbjct 1200 GAGATATGATC-GCTCAAGGGTCTTGAAACCGAAGTA 1235 >seq136 Length=27106 Score = 131 bits (144), Expect = 2e-25 Identities = 226/327 (69%), Gaps = 20/327 (6%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||||||||| || | |||||| | || ||||| ||||||||| | Sbjct 21151 AAACCATCCATCTCGGTTAGAATTTGATTGAGAGTAGCTTCTCGCTCATCATTCCC---- 21206 Query 11600 ATACCACCA---GCACTG---------CGTTGCTTGCCCACCGCATCAATCTCATCAATG 11647 ||||||| | || | || ||| || | ||||| || ||||||||| Sbjct 21207 --ACCACCAAATGAACCGGCCTTTCCACGAGCCTTTCCAATGGCATCGATTTCATCAATG 21264 Query 11648 AAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCA 11707 |||| |||||| || ||| | | ||| || |||||||||| ||||| || |||| Sbjct 21265 AAGATAATACAAGGGGTATTCTTTCTGGCCATAGCAAAGAGATCTCGAACTCTGGAGGCA 21324 Query 11708 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG-CACTGGATGAATGGGACATT 11766 || ||||||||||||||||||||||| | | || | |||| || ||| || ||| Sbjct 21325 CCAACACCAACAAACATCTCCACAAACTCGGAACCACTGACACT-GAAGAAAGGTACACC 21383 Query 11767 TGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAG 11826 |||||| || || |||| || || | ||||| || ||||| || ||| | || Sbjct 21384 TGATTCTCCAGCTGTGGCCTTTGCTAGTAAAGTCTTACCAGTACCAGGTGGACCAGAAAG 21443 Query 11827 AAGGGCGCCTCGGGGGATCTTGGCACC 11853 || ||| ||||| || ||||| ||||| Sbjct 21444 AATGGCTCCTCGAGGAATCTTAGCACC 21470 >seq2965 Length=6591 Score = 107 bits (118), Expect = 2e-18 Identities = 291/445 (65%), Gaps = 8/445 (2%) Strand=Plus/Minus Query 122378 CGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAA 122437 |||| |||||||| |||||||||||||| || | || ||||| ||||| ||||| | Sbjct 6290 CGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTCTCCATGAAGTCGA 6231 Query 122438 ATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACA 122497 |||| || | || ||| | || | |||||| ||||| | | Sbjct 6230 ATGGGTTGGCAACCTTGTAAACCTTTTCATTACCGAGAGAGAGGAGGAGCCGATCAGCGA 6171 Query 122498 CATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGTG 122557 | |||||||||| | |||| | | |||||| |||| || ||| || || | Sbjct 6170 CGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGAGCACAAGGAAGAG 6111 Query 122558 CGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTT 122617 | || | |||| ||| |||||||||||| ||||| | | || ||| |||| | | Sbjct 6110 CCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCTTGGACTGCTG 6051 Query 122618 CGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA----AACTCCTGGTGG 122673 | || | || | || ||| |||||| | |||| || || |||| Sbjct 6050 CCTTACTTGGGCGATGCTTCAAGTGGGAGAAGAG----AAGGCATGCGAAGTCGGTGTGG 5995 Query 122674 AGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGC 122733 |||||||| || ||||| || | || || |||||| ||||| | |||||| || ||| Sbjct 5994 AGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGC 5935 Query 122734 TTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCA 122793 ||||||||||| | || | ||| || || ||||||||||||||| || ||| Sbjct 5934 TTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACGGCAGCA 5875 Query 122794 AACGCAAAAAGGCGTTCGGCGAAGG 122818 || |||| || |||| || |||| Sbjct 5874 AAGGCAACGAGACGTTGAGCAAAGG 5850 >seq2230 Length=8342 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 ||||| |||||| ||||||| ||| ||||||||||| | |||||||| ||||| || Sbjct 8342 GGTGTAATTGATGCCGACTACCGCGGTCAAGTCAAAGTCCTCCTCTTCAACCACGGTGAG 8283 Query 164724 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAG 164774 ||||| || ||||| ||| | || ||||| | || ||| | ||| | ||| Sbjct 8282 AAAGATTTCGAGGTCAAGGAGGGAGATCGTGTAGCTCAATTGGTCTTGGAG 8232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627955466450400