Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1315 158 1e-33 seq2965 123 3e-23 seq5294 107 2e-18 seq136 89.7 6e-13 >seq1315 Length=11532 Score = 158 bits (174), Expect = 1e-33 Identities = 674/1051 (64%), Gaps = 33/1051 (3%) Strand=Plus/Plus Query 118525 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAG 118584 |||| || ||||||||||| ||||| |||| || | || | | ||| ||| | | Sbjct 134 CATCAGCAAGACCTTGGACGCCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTG 193 Query 118585 CGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 118641 | ||| || || || | || |||||| | | | || | |||||| ||||| Sbjct 194 C---CTCAGGAACTGGGTAGTAGTTGACATCGATGATCTTGTTCAAGTTTTTGACGACAA 250 Query 118642 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 118701 | | || ||| |||||||| | | | ||| || || ||||| |||| ||||| Sbjct 251 CTTGGCAGACTTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATATG 310 Query 118702 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 118761 | || || || | || |||| || || |||| |||||| || ||| || | Sbjct 311 TTGGGAGAGCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGA 370 Query 118762 TAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 118821 ||| || || |||||||| || ||| ||||| || | |||||||| || |||| Sbjct 371 CAATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTC 430 Query 118822 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 118881 ||| || |||||||||||||||||| | || | || ||||| ||||| | || ||| | Sbjct 431 GGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGA 490 Query 118882 TAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTT---GGCTC-GCCCCTCTTCCTC 118936 ||| | ||| | | | | ||| | || || | | | ||||| ||| Sbjct 491 TAGAGTACCAAAGCTTTTG-----GGCCTTGATGCTTTTACGACCCTTGCCCTCAGACTC 545 Query 118937 GTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTT 118996 ||| || || | || || ||||| ||||| | | || | | || || || Sbjct 546 GTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTC 605 Query 118997 ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGG 119056 | ||||| | | | ||| | || ||||| |||||||||||||| ||||| Sbjct 606 GTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGG 665 Query 119057 GATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACG 119116 |||||||| || |||||||||| || ||| | || || | || || || || Sbjct 666 AATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCG 725 Query 119117 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 119176 | || | || || | | ||| |||||||| || || ||||| | |||| | || Sbjct 726 GAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACC 785 Query 119177 CTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAG 119230 | |||| |||| | || | ||||| | || ||| ||| || || ||||| Sbjct 786 ---AGGACGCTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAG 842 Query 119231 CATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAG-ACTTATTGGCTC 119289 ||| |||| ||| || | ||| | || ||||| || ||| || || || || | Sbjct 843 CATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTT-GCAC 901 Query 119290 TGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 119349 || ||| | | | ||||||||| || || |||||| || || || | Sbjct 902 GGATTCTGTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCT 961 Query 119350 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 119409 | | || | ||||| ||||| || ||| |||| | |||| |||||||| | Sbjct 962 TCAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATG 1021 Query 119410 ACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATA 119468 | | ||| || || ||||||||||| ||| || ||||||| |||||| |||| || Sbjct 1022 AAAGTTG-TGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAA-GTA 1079 Query 119469 CCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATAC 119526 ||| ||||||| || ||||||||| | | | || ||| || || ||||| || | Sbjct 1080 -TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTC 1138 Query 119527 CGATCGAGACCCGCATAAACATGTATTGGGG 119557 ||| | ||| ||||||| ||| | ||| || Sbjct 1139 CGACAGCGACACGCATAATCATATGTTGTGG 1169 >seq2965 Length=6591 Score = 123 bits (136), Expect = 3e-23 Identities = 298/445 (67%), Gaps = 12/445 (3%) Strand=Plus/Minus Query 129737 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 129796 || ||||||||||||||||| ||||| ||| | | ||| |||||||| || || ||| Sbjct 6288 ACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTCTCCATGAAGTCGAAT 6229 Query 129797 GGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACGATCCGAGAC 129855 ||||| || ||| | || | || | |||||| ||||| | ||| Sbjct 6228 GGGTTGGCAACCTTGTAAACCTTTT-CATTACCGAGAGAGAGGAGGAGCCGATCAGCGAC 6170 Query 129856 GTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGAGCGC 129915 | |||||||||| | |||| | || |||||| |||| || ||| || || || Sbjct 6169 GAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGAGCACAAGGAAGAGC 6110 Query 129916 GTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTC 129975 || | |||| | | |||||| || ||||| || | || ||| || | | | Sbjct 6109 CTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCTTGGACTGCTGC 6050 Query 129976 CGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCA----AACTCCTGGTGG 130030 | | | || | || || |||| |||||| | |||| || || |||| Sbjct 6049 CTTACTTGGGCGAT-GCTTCAAGTGGGAGAAGAG----AAGGCATGCGAAGTCGGTGTGG 5995 Query 130031 AGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGC 130090 |||||||||||||||||||| | || || |||||| ||||| | |||||| || ||| Sbjct 5994 AGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGC 5935 Query 130091 TTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCG 130150 |||||||||||||| || | || || ||| ||||||||| ||||| || || Sbjct 5934 TTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACGGCAGCA 5875 Query 130151 AACGCAAAGAGACGCTCAGCAAAGG 130175 || |||| |||||| | |||||||| Sbjct 5874 AAGGCAACGAGACGTTGAGCAAAGG 5850 >seq5294 Length=3402 Score = 107 bits (118), Expect = 2e-18 Identities = 321/486 (66%), Gaps = 16/486 (3%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| || ||| || ||| ||| ||||| |||||||| || |||||||| | Sbjct 640 TGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGAC 581 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 || ||||||| | | |||||| || | ||| | |||||| | |||| Sbjct 580 CCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTCATGT 521 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || |||||| ||| ||||| || || || || || || || ||||| | || || Sbjct 520 GGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAA-CA 462 Query 117985 CATCCTTCATCTTGA--TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGAT 118042 || | | | ||| ||||||| |||||| ||||||| ||| |||||| ||||||| Sbjct 461 -ATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGAT 403 Query 118043 ATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGA---TCCTTCATATCCTT 118099 | | ||||||||| |||||||| | | | |||| | | |||||| | | Sbjct 402 GTTTGGAACATTTTGGATCGATCCACCATC---GGCAATGATACGGTTCTTCATGTTATC 346 Query 118100 TGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAAC 118157 |||||||| || || | ||||||| | || ||| | ||||||| ||| Sbjct 345 GGACCAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGT--TGACAACTTGGAAC 288 Query 118158 TCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATT 118216 || || || || || | ||| ||||| |||| ||||||||||| |||||||| || Sbjct 287 TCTCCAGCAAGAACACGCCG-AGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTT 229 Query 118217 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276 | || | ||| || || ||| || ||||| || || | || | ||||| || Sbjct 228 GAATCCAAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCG 169 Query 118277 GAGACC 118282 || ||| Sbjct 168 GATACC 163 >seq136 Length=27106 Score = 89.7 bits (98), Expect = 6e-13 Identities = 216/322 (67%), Gaps = 10/322 (3%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG- 14211 || ||||||||||| || | | |||||||| || ||| || ||||||||| || Sbjct 21151 AAACCATCCATCTCGGTTAGAATTTGATTGAGAGTAGCTTCTCGCTCATCATTCCCACCA 21210 Query 14212 -CATACCACCCGCACTG----CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 || | | ||| || || ||| || | ||| || |||||||| ||||| | Sbjct 21211 CCAAATGAACCGGCCTTTCCACGAGCCTTTCCAATGGCATCGATTTCATCAATGAAGATA 21270 Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 ||||| || ||| | | ||| | |||||| |||||| ||||| |||||| ||| Sbjct 21271 ATACAAGGGGTATTCTTTCTGGCCATAGCAAAGAGATCTCGAACTCTGGAGGCACCAACA 21330 Query 14327 CCCACAAACATCTCCACAAAATTGG--CGGCGGAACATTGGATGAAGGGGACGTTAGATT 14384 || ||||||||||||||||| | || | | | ||| | || ||| || || |||| Sbjct 21331 CCAACAAACATCTCCACAAACTCGGAACCACTG-ACACT-GAAGAAAGGTACACCTGATT 21388 Query 14385 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGG 14444 | || || |||| || || | ||||| || || || ||| || | |||| || Sbjct 21389 CTCCAGCTGTGGCCTTTGCTAGTAAAGTCTTACCAGTACCAGGTGGACCAGAAAGAATGG 21448 Query 14445 CACCACGTGGGATCCTGGCACC 14466 | || || || ||| | ||||| Sbjct 21449 CTCCTCGAGGAATCTTAGCACC 21470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618359835940440