Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 158 1e-33
seq2965 123 3e-23
seq5294 107 2e-18
seq136 89.7 6e-13
>seq1315
Length=11532
Score = 158 bits (174), Expect = 1e-33
Identities = 674/1051 (64%), Gaps = 33/1051 (3%)
Strand=Plus/Plus
Query 118525 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAG 118584
|||| || ||||||||||| ||||| |||| || | || | | ||| ||| | |
Sbjct 134 CATCAGCAAGACCTTGGACGCCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTG 193
Query 118585 CGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 118641
| ||| || || || | || |||||| | | | || | |||||| |||||
Sbjct 194 C---CTCAGGAACTGGGTAGTAGTTGACATCGATGATCTTGTTCAAGTTTTTGACGACAA 250
Query 118642 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 118701
| | || ||| |||||||| | | | ||| || || ||||| |||| |||||
Sbjct 251 CTTGGCAGACTTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATATG 310
Query 118702 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 118761
| || || || | || |||| || || |||| |||||| || ||| || |
Sbjct 311 TTGGGAGAGCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGA 370
Query 118762 TAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 118821
||| || || |||||||| || ||| ||||| || | |||||||| || ||||
Sbjct 371 CAATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTC 430
Query 118822 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 118881
||| || |||||||||||||||||| | || | || ||||| ||||| | || ||| |
Sbjct 431 GGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGA 490
Query 118882 TAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTT---GGCTC-GCCCCTCTTCCTC 118936
||| | ||| | | | | ||| | || || | | | ||||| |||
Sbjct 491 TAGAGTACCAAAGCTTTTG-----GGCCTTGATGCTTTTACGACCCTTGCCCTCAGACTC 545
Query 118937 GTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTT 118996
||| || || | || || ||||| ||||| | | || | | || || ||
Sbjct 546 GTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTC 605
Query 118997 ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGG 119056
| ||||| | | | ||| | || ||||| |||||||||||||| |||||
Sbjct 606 GTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGG 665
Query 119057 GATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACG 119116
|||||||| || |||||||||| || ||| | || || | || || || ||
Sbjct 666 AATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCG 725
Query 119117 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 119176
| || | || || | | ||| |||||||| || || ||||| | |||| | ||
Sbjct 726 GAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACC 785
Query 119177 CTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAG 119230
| |||| |||| | || | ||||| | || ||| ||| || || |||||
Sbjct 786 ---AGGACGCTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAG 842
Query 119231 CATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAG-ACTTATTGGCTC 119289
||| |||| ||| || | ||| | || ||||| || ||| || || || || |
Sbjct 843 CATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTT-GCAC 901
Query 119290 TGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 119349
|| ||| | | | ||||||||| || || |||||| || || || |
Sbjct 902 GGATTCTGTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCT 961
Query 119350 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 119409
| | || | ||||| ||||| || ||| |||| | |||| |||||||| |
Sbjct 962 TCAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATG 1021
Query 119410 ACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATA 119468
| | ||| || || ||||||||||| ||| || ||||||| |||||| |||| ||
Sbjct 1022 AAAGTTG-TGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAA-GTA 1079
Query 119469 CCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATAC 119526
||| ||||||| || ||||||||| | | | || ||| || || ||||| || |
Sbjct 1080 -TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTC 1138
Query 119527 CGATCGAGACCCGCATAAACATGTATTGGGG 119557
||| | ||| ||||||| ||| | ||| ||
Sbjct 1139 CGACAGCGACACGCATAATCATATGTTGTGG 1169
>seq2965
Length=6591
Score = 123 bits (136), Expect = 3e-23
Identities = 298/445 (67%), Gaps = 12/445 (3%)
Strand=Plus/Minus
Query 129737 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 129796
|| ||||||||||||||||| ||||| ||| | | ||| |||||||| || || |||
Sbjct 6288 ACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTCTCCATGAAGTCGAAT 6229
Query 129797 GGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACGATCCGAGAC 129855
||||| || ||| | || | || | |||||| ||||| | |||
Sbjct 6228 GGGTTGGCAACCTTGTAAACCTTTT-CATTACCGAGAGAGAGGAGGAGCCGATCAGCGAC 6170
Query 129856 GTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGAGCGC 129915
| |||||||||| | |||| | || |||||| |||| || ||| || || ||
Sbjct 6169 GAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGAGCACAAGGAAGAGC 6110
Query 129916 GTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTC 129975
|| | |||| | | |||||| || ||||| || | || ||| || | | |
Sbjct 6109 CTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCTTGGACTGCTGC 6050
Query 129976 CGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCA----AACTCCTGGTGG 130030
| | | || | || || |||| |||||| | |||| || || ||||
Sbjct 6049 CTTACTTGGGCGAT-GCTTCAAGTGGGAGAAGAG----AAGGCATGCGAAGTCGGTGTGG 5995
Query 130031 AGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGC 130090
|||||||||||||||||||| | || || |||||| ||||| | |||||| || |||
Sbjct 5994 AGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGC 5935
Query 130091 TTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCG 130150
|||||||||||||| || | || || ||| ||||||||| ||||| || ||
Sbjct 5934 TTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACGGCAGCA 5875
Query 130151 AACGCAAAGAGACGCTCAGCAAAGG 130175
|| |||| |||||| | ||||||||
Sbjct 5874 AAGGCAACGAGACGTTGAGCAAAGG 5850
>seq5294
Length=3402
Score = 107 bits (118), Expect = 2e-18
Identities = 321/486 (66%), Gaps = 16/486 (3%)
Strand=Plus/Minus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
||||||| || ||| || ||| ||| ||||| |||||||| || |||||||| |
Sbjct 640 TGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGAC 581
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924
|| ||||||| | | |||||| || | ||| | |||||| | ||||
Sbjct 580 CCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTCATGT 521
Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984
|| |||||| ||| ||||| || || || || || || || ||||| | || ||
Sbjct 520 GGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAA-CA 462
Query 117985 CATCCTTCATCTTGA--TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGAT 118042
|| | | | ||| ||||||| |||||| ||||||| ||| |||||| |||||||
Sbjct 461 -ATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGAT 403
Query 118043 ATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGA---TCCTTCATATCCTT 118099
| | ||||||||| |||||||| | | | |||| | | |||||| | |
Sbjct 402 GTTTGGAACATTTTGGATCGATCCACCATC---GGCAATGATACGGTTCTTCATGTTATC 346
Query 118100 TGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAAC 118157
|||||||| || || | ||||||| | || ||| | ||||||| |||
Sbjct 345 GGACCAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGT--TGACAACTTGGAAC 288
Query 118158 TCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATT 118216
|| || || || || | ||| ||||| |||| ||||||||||| |||||||| ||
Sbjct 287 TCTCCAGCAAGAACACGCCG-AGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTT 229
Query 118217 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276
| || | ||| || || ||| || ||||| || || | || | ||||| ||
Sbjct 228 GAATCCAAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCG 169
Query 118277 GAGACC 118282
|| |||
Sbjct 168 GATACC 163
>seq136
Length=27106
Score = 89.7 bits (98), Expect = 6e-13
Identities = 216/322 (67%), Gaps = 10/322 (3%)
Strand=Plus/Plus
Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG- 14211
|| ||||||||||| || | | |||||||| || ||| || ||||||||| ||
Sbjct 21151 AAACCATCCATCTCGGTTAGAATTTGATTGAGAGTAGCTTCTCGCTCATCATTCCCACCA 21210
Query 14212 -CATACCACCCGCACTG----CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266
|| | | ||| || || ||| || | ||| || |||||||| ||||| |
Sbjct 21211 CCAAATGAACCGGCCTTTCCACGAGCCTTTCCAATGGCATCGATTTCATCAATGAAGATA 21270
Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326
||||| || ||| | | ||| | |||||| |||||| ||||| |||||| |||
Sbjct 21271 ATACAAGGGGTATTCTTTCTGGCCATAGCAAAGAGATCTCGAACTCTGGAGGCACCAACA 21330
Query 14327 CCCACAAACATCTCCACAAAATTGG--CGGCGGAACATTGGATGAAGGGGACGTTAGATT 14384
|| ||||||||||||||||| | || | | | ||| | || ||| || || ||||
Sbjct 21331 CCAACAAACATCTCCACAAACTCGGAACCACTG-ACACT-GAAGAAAGGTACACCTGATT 21388
Query 14385 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGG 14444
| || || |||| || || | ||||| || || || ||| || | |||| ||
Sbjct 21389 CTCCAGCTGTGGCCTTTGCTAGTAAAGTCTTACCAGTACCAGGTGGACCAGAAAGAATGG 21448
Query 14445 CACCACGTGGGATCCTGGCACC 14466
| || || || ||| | |||||
Sbjct 21449 CTCCTCGAGGAATCTTAGCACC 21470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618359835940440
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