Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1315 237 2e-57 seq2965 122 1e-22 seq136 105 8e-18 >seq1315 Length=11532 Score = 237 bits (262), Expect = 2e-57 Identities = 732/1117 (66%), Gaps = 33/1117 (3%) Strand=Plus/Minus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTCTTGAT 104214 || || ||| |||| ||||||||| || | ||||| | || |||||||| | ||| Sbjct 1235 TACTTCGGTTTCAAGACCCTTGAGC-GATCATATCTCCTCCGTCTCGATGG---CAAGAT 1180 Query 104215 G---GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 ||| ||||| | ||| | ||||| || || |||| || || || || || || Sbjct 1179 CTGCGAACGTCCACAACATATGATTATGCGTGTCGCTGTCGGAATCCACGGTGAGGATAT 1120 Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACA 104329 ||| ||| | | ||||| ||| || ||||||| ||| || |||| ||||| || Sbjct 1119 TGAGGCTGCCATCGAGACCTACAACTTGATGTCCAGCAAA-TAC-TTCACCCACGCCTCA 1062 Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389 ||||| || ||| ||||||||||||| | | ||| | || ||||||||||||| | Sbjct 1061 CCAACACTTTTCGCTGCTGGTACACCACAAGCACAACTTTCATCATGCTTCCTTATCGAC 1002 Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 104449 | ||||||||| || | |||||||||| || | | | ||||| || ||| Sbjct 1001 ATGAAGGAGGACAGCATTGATGGTATCTATGACACATTGAAGATTTGTGCCATGATTTCA 942 Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509 ||| ||||| |||||||| | | | || | | || | || ||| Sbjct 941 AAGAACGCTGGTGGTATTGGTCTCAATGTTCACAGAATCCGTGCAACCGGTGCTTACATT 882 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 || ||||| || | || | || || |||| |||||||| || || ||| ||| Sbjct 881 GCTGGTACAAACGGAAACTCCAACGGAATCGTTCCTATGCTTCGAGTTTTCAACAACACC 822 Query 104570 GCGCGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTT 104623 || || ||||| |||||| ||| ||||| || || |||| | || ||| Sbjct 821 GCCCGATATGTTGATCAAGGTGGTAACAAGCGTCCT---GGTGCTTTCGCCATTTACCTT 765 Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAG 104683 |||||||||||||| ||| | | |||||||| || | || ||||| || | ||| Sbjct 764 GAGCCATGGCACGCTGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAG 705 Query 104684 GAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGA 104743 |||| || ||| |||||||||| ||||||||||||||||||||||||||||||| | Sbjct 704 GAGGTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTCTTCATGAAGCGT 645 Query 104744 GTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGAT 104803 ||||| ||| | | ||| | | | || || || || ||||| | |||| Sbjct 644 GTTGAAAAGAACCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGCTTGGCCGAC 585 Query 104804 GCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACT 104863 | | ||||| ||||| || || | || || |||||| | ||| | | | | Sbjct 584 GTCTACGGTGACGAGTTCGAGGCTTTGTATGAGAAATACGAGTCTG-AGGGCAAGGGTCG 526 Query 104864 GCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 104922 | | | || | | | | ||| | |||| ||| || ||||||| ||||| || Sbjct 525 TAAAAGCATCAAGGCCCAAAAGCTTTGGTACTCTATCCTCGAGGCTCAAACTGAGACCGG 466 Query 104923 TACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG 104982 | || | |||||||||||| || || || |||| |||||| || ||||||||| | || Sbjct 465 AAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTTGG 406 Query 104983 TGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGAG 105040 | ||| ||| ||||| | ||||| || || | ||| ||| | || |||||| Sbjct 405 TACCATCCGGAGCTCCAACTTGTGTACTGAGATTGTCGAA--TACTGTGCACCTGATGAG 348 Query 105041 ACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG 105100 ||||| || ||| | ||||| | |||||||| | ||||| ||| |||| Sbjct 347 GTTGCTGTTTGCAACTTGGCATCGCTTGCTCTCCCAACATATGTTGATGAGAAGACTGCC 288 Query 105101 ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGA 105160 || | ||| | | || || |||||||| || |||| ||||||| | |||| Sbjct 287 ACTTATGACTTCCAGAAGCTTCACGAAGTCTGCCAAGTTGTCGTCAAAAACTTGAACAAG 228 Query 105161 GTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACAC 105217 | || ||| || | ||||| || |||| || | || ||| | | ||| Sbjct 227 ATCATCGATGTCAACTACTACCCAGTTCCTGAG---GCAAGAAAGAGCAATTTCCGTCAC 171 Query 105218 CGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATG 105254 | || |||| |||||| || || ||||| || |||| Sbjct 170 AGACCTATTGCTCTCGGCGTCCAAGGTCTTGCTGATG 134 >seq2965 Length=6591 Score = 122 bits (134), Expect = 1e-22 Identities = 157/214 (73%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTC 94790 |||||| || || | ||||| || ||||||||| | ||| | | |||| |||| Sbjct 5788 AGTTCCTTGCATCAAGAAGAAGGCCGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTC 5847 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | |||||||| | || ||| | || ||||| |||||||||||||||||| ||| Sbjct 5848 ---TACCTTTGCTCAACGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGG 5904 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 ||| ||| | || | ||| | |||||||| || |||||| | ||||| |||||| Sbjct 5905 TTCTTTCGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTC 5964 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||||| | ||||| ||||||||||| |||||| Sbjct 5965 CAACGAGTTGATCTCCCGTGACGAGGGTCTCCAC 5998 >seq136 Length=27106 Score = 105 bits (116), Expect = 8e-18 Identities = 244/366 (67%), Gaps = 34/366 (9%) Strand=Plus/Plus Query 9582 CGGCGATGACAACAATACCTGTTT--CATTATCAAAACCATCCATCTCTGTCAAAAGTTG 9639 |||| | ||| |||| |||| | || ||| |||||||||||||| || | || ||| Sbjct 21119 CGGCAAGGACCACAA--CCTGCTCAGCAGTATTGAAACCATCCATCTCGGTTAGAATTTG 21176 Query 9640 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA---GCACTG-------- 9688 || | ||| ||| || ||||||||| | ||||||| | || | Sbjct 21177 ATTGAGAGTAGCTTCTCGCTCATCATTCCC------ACCACCAAATGAACCGGCCTTTCC 21230 Query 9689 -CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCG 9747 || |||||| | |||||| || ||||||||||||| || || || ||| | | Sbjct 21231 ACGAGCCTTTCCAATGGCATCGATTTCATCAATGAAGATAATACAAGGGGTATTCTTTCT 21290 Query 9748 AGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 || | |||||||||| || || | ||| || ||||||||||||||||||||||| Sbjct 21291 GGCCATAGCAAAGAGATCTCGAACTCTGGAGGCACCAACACCAACAAACATCTCCACAAA 21350 Query 9808 GTTTGCGGCGGAA-CATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 9861 | ||||| || || || ||| || ||| ||||| || || |||| Sbjct 21351 CT------CGGAACCACTGACACTGAAGAAAGGTACACCTGATTCTCCAGCTGTGGCCTT 21404 Query 9862 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTT 9921 || || | ||||||||| ||||| || ||| | || | ||| ||||| |||||||| Sbjct 21405 TGCTAGTAAAGTCTTACCAGTACCAGGTGGACCAGAAAGAATGGCTCCTCGAGGAATCTT 21464 Query 9922 GGCGCC 9927 || || Sbjct 21465 AGCACC 21470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583189722380760