Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1973 132 1e-25 seq637 129 2e-24 seq279 118 3e-21 seq2868 93.3 1e-13 >seq1973 Length=9094 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | |||||| |||||||| || || ||||| || || Sbjct 6138 CATACCACCACGGAGACGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTC 6079 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||| || || || || ||||| || || || || || || || || ||||| || Sbjct 6078 GGAGAGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGG 6019 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || |||||||| || || | || ||||||||||| | || || | ||| Sbjct 6018 TGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTC 5959 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || || ||||| Sbjct 5958 GACCTCGAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 5908 Score = 114 bits (126), Expect = 4e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | ||||| |||||||| || || ||||| | Sbjct 5914 TTTGCATACCACCACGGAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATATTGT 5855 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | ||| || || || || ||||| || || |||||||| || || || || | Sbjct 5854 AGTCGGAGAGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGT 5795 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || | || ||||| || || | |||| | Sbjct 5794 CCGGTGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCACTGG 5735 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| ||||| || || | ||||| || || Sbjct 5734 ATTCGACTTCGAGAGTGATGGTCTTGCCAGT 5704 Score = 104 bits (114), Expect = 7e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| |||||||| || || || | || || ||||| || | ||| || || || || Sbjct 6327 CTCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCATCCTCCAATTGCTTGCCGGCGAA 6268 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 || | || || ||||| || ||||| || || |||||||| || || | || ||||| Sbjct 6267 AATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATT 6208 Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 |||||| | || || | |||||||| | ||||| ||||| ||||| || || || || Sbjct 6207 ATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAAC 6148 Query 140726 AAAAATCTGCAT 140737 || |||||||| Sbjct 6147 GAAGATCTGCAT 6136 >seq637 Length=16155 Score = 129 bits (142), Expect = 2e-24 Identities = 226/329 (69%), Gaps = 0/329 (0%) Strand=Plus/Minus Query 378120 ATCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGT 378179 ||| || ||||| || || || |||||||||||| | | |||| || || Sbjct 4833 ATCCAAACCATCCTCGCCGTAGACGAATTGAACAATGTCGCCGAGGGAATTTCGGACTGT 4774 Query 378180 CATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACC 378239 ||||||| | | || | |||||| | |||||| | ||| || || ||||||||| Sbjct 4773 TCCATCATATTTGGCAATGACATCTTCAAGTGCTTTGACAAGACGACGTTGAATATAACC 4714 Query 378240 AGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAA 378299 ||||| ||| || |||||||| || || | ||| |||||||| |||| || ||||| Sbjct 4713 AGTTTCGGCAGTCTTTACTGCAGTGTCGATGAGACCTTCACGACCAGCCATGGCGTGGAA 4654 Query 378300 GAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCC 378359 ||| || || || || || | || | | | | || | || | || ||||||| | Sbjct 4653 GAAAAACTCGGTTGGTGTTAACCCTCTGAGATACGAGTTTTCCACGAAACCTCTTGACTC 4594 Query 378360 TGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAAT 378419 ||| |||| ||||| ||||| ||||||| | ||| || | | || || | ||||| Sbjct 4593 TGGGGAATAATCATCCTTTGTGAAATGAGGAAGTGTTCGGTATTTGAATCCGAAAGGAAT 4534 Query 378420 TCGTTTTCCATCAACATTCTGTTGACCAA 378448 || ||||| |||||| |||||||||| Sbjct 4533 ACGCTTTCCTTCAACAGATTGTTGACCAA 4505 Score = 111 bits (122), Expect = 5e-19 Identities = 119/154 (77%), Gaps = 5/154 (3%) Strand=Plus/Minus Query 377435 ATAATGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAA 377494 ||| ||| ||| || ||||| || ||||||||| | || |||||| || || | | Sbjct 5537 ATATTGAGAAT-TTCCTTCAGA-CGAGGCACACCAAGGGTGACATTC---TTGGAAGACA 5483 Query 377495 CACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCG 377554 |||| ||||| ||||||||||| || || | ||| |||| ||| || || || ||||| | Sbjct 5482 CACCGGCAAAATGGAAAGTATTGAGCGTCATTTGCGTAGCGGGTTCTCCGATCGACTGAG 5423 Query 377555 CTGCAATAACGCCAACCATTTCTCCAGGATTGAC 377588 | |||| || ||||||||||||||||||||||| Sbjct 5422 CAGCAAGCACTCCAACCATTTCTCCAGGATTGAC 5389 >seq279 Length=21859 Score = 118 bits (130), Expect = 3e-21 Identities = 240/356 (67%), Gaps = 3/356 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || |||| | ||| || | | || ||||||||| | || || ||||| | Sbjct 18883 CCCGAGGAGGTTTCCGCCATGATTCTCGGAAAGATGAAGGAAGTCGCAGAGTCATATCTC 18942 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 ||| ||| || | || ||| ||||||| ||||||||||| || || |||| | Sbjct 18943 TCCAAAAAAGTCACCCACGCAGTTGTTACTGTTCCAGCCTATTTCAACGACAACCAGAGA 19002 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || |||||||| | |||||| || || || || || | | | || ||| Sbjct 19003 CAAGCCACCAAGGATGCTGGTATCATTGCCGGTTTGAACGTCCTCCGTGTCGTCAACGAA 19062 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || ||||| || || || || ||||| || | || | | || | | | || Sbjct 19063 CCCACCGCCGCAGCTATCGCCTACGGTCTTGACAA---GGTTGGCAAGGAGAGACAAATC 19119 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || | | ||| | ||||| || || || ||||| || || || | ||||||| || Sbjct 19120 ATTGTCTACGATCTCGGTGGAGGAACCTTCGATGTTTCCCTCCTCTCTATTGAAGATGGT 19179 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 |||| || ||| | || |||||||| || ||| | ||||| || ||||| || Sbjct 19180 GTTTTCGAGGTTCTTTCTACCGCTGGTGACACCCATTTGGGTGGTGAGGATTTCGA 19235 >seq2868 Length=6797 Score = 93.3 bits (102), Expect = 1e-13 Identities = 475/740 (64%), Gaps = 27/740 (4%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || ||||| |||||||| || || || ||| ||| || || || |||||| Sbjct 3047 GCAGTCATCACTGTCCCAGCCTACTTCAACGACAACCAACGTCAAGCCACCAAGGATGCT 2988 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || ||||| |||| || || || || ||||| || || || Sbjct 2987 GGTGCCATTGCCGGTCTTAACGTTCTCCGAATCATCAACGAGCCAACTGCCGCTGCTATC 2928 Query 349730 GCATATGGGCTTGAT-----AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATT 349784 ||||| || || | | ||||| || | || |||| | | || | ||| Sbjct 2927 GCATACGGTCTCGGTGCCGGAAAATCCA--ACAAGGAGCGAAATGTCTTGATCTACGATC 2870 Query 349785 TAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAA-GTT 349843 | ||||| || ||||| ||||| || || || | || | || | | |||| | || Sbjct 2869 TCGGTGGAGGAACTTTCGATGTCTCCCTCCTTA-ACATCCAGGGAGGTGTTTTCACCGTC 2811 Query 349844 AAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCG 349903 || || |||||||||||||| ||| | || || ||||||| ||| | | || | ||| Sbjct 2810 AAGGCCACTGCTGGTGATACCCATTTGGGAGGTCAAGATTTCGAT-ACCAACTTG-CTCG 2753 Query 349904 --CATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAG 349961 || || || || || | | | | || | ||| | | | || | | | Sbjct 2752 ACCACTTCAAGAAGGAGTTCACAAGAAAGACCAAGAAGGATTTGTCCGGTGATGCCCGTG 2693 Query 349962 CAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTAC--TAC 350019 | | || || || | ||||| || || ||||||||| | | | || | || | | Sbjct 2692 CTCTTCGACGTCTTCGTACTGCTTGCGAGCGTGCTAAGAGAAC--TCTCTCCAACGGTGC 2635 Query 350020 CCAAACCTCTATTGAAATTGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTATTA 350078 |||||| || |||| |||||||| |||| | ||||| | || ||| | || | Sbjct 2634 TCAAACCACTGTTGAGATTGATTC-CTTGTTCGATGGAGAGGACTTCAACGCTCAAATCA 2576 Query 350079 CACGTGCTCGGTTTGAAGAATT--ATGTATGGATCTTTTTAGAGCAACAATGGATCCTGT 350136 | |||||||| || || || || | | | | || | | || | || || || Sbjct 2575 CCCGTGCTCGTTTCGAGGACTTGAACTCAAAGGCC--TTCAATGGTACTTTAGACCCAGT 2518 Query 350137 GGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGT 350196 | | ||||| || ||||| || || || | || |||| ||| | || | || Sbjct 2517 CGCCCAGGTATTGAAGGATGCCAACATCGATAAGAGCAAGGTTGACGAAATTGTGCTTGT 2458 Query 350197 TGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAA 350256 |||||| || || ||||||||| | ||| || | || || || ||| | ||| | Sbjct 2457 TGGTGGATCCACCCGTATTCCACGGATACAAAAGCTCCTCAGCGATTTCTTTGACGGC-A 2399 Query 350257 AGAACCTTCTAGATCA--ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAG 350314 |||| | || ||| | || || || ||||| ||||||||||| ||||| ||||| || Sbjct 2398 AGAAGC-TCGAGAAGAGCATCAACCCTGATGAGGCTGTTGCATACGGTGCCGCTGTCCAA 2340 Query 350315 GCATCTATTTTATCTGGAAA 350334 || |||||| || ||||| Sbjct 2339 GCTGGTATTTTGTCAGGAAA 2320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515065130993447