Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 132 1e-25
seq637 129 2e-24
seq279 118 3e-21
seq2868 93.3 1e-13
>seq1973
Length=9094
Score = 132 bits (146), Expect = 1e-25
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | |||||| |||||||| || || ||||| || ||
Sbjct 6138 CATACCACCACGGAGACGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTC 6079
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||| || || || || ||||| || || || || || || || || ||||| ||
Sbjct 6078 GGAGAGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGG 6019
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || |||||||| || || | || ||||||||||| | || || | |||
Sbjct 6018 TGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTC 5959
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | ||||| ||||| || || || || || || |||||
Sbjct 5958 GACCTCGAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 5908
Score = 114 bits (126), Expect = 4e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||| | ||||| |||||||| || || ||||| |
Sbjct 5914 TTTGCATACCACCACGGAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATATTGT 5855
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | ||| || || || || ||||| || || |||||||| || || || || |
Sbjct 5854 AGTCGGAGAGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGT 5795
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || || |||||||| || | || ||||| || || | |||| |
Sbjct 5794 CCGGTGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCACTGG 5735
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
||| ||||| || || | ||||| || ||
Sbjct 5734 ATTCGACTTCGAGAGTGATGGTCTTGCCAGT 5704
Score = 104 bits (114), Expect = 7e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605
||| |||||||| || || || | || || ||||| || | ||| || || || ||
Sbjct 6327 CTCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCATCCTCCAATTGCTTGCCGGCGAA 6268
Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665
|| | || || ||||| || ||||| || || |||||||| || || | || |||||
Sbjct 6267 AATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATT 6208
Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|||||| | || || | |||||||| | ||||| ||||| ||||| || || || ||
Sbjct 6207 ATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAAC 6148
Query 140726 AAAAATCTGCAT 140737
|| ||||||||
Sbjct 6147 GAAGATCTGCAT 6136
>seq637
Length=16155
Score = 129 bits (142), Expect = 2e-24
Identities = 226/329 (69%), Gaps = 0/329 (0%)
Strand=Plus/Minus
Query 378120 ATCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGT 378179
||| || ||||| || || || |||||||||||| | | |||| || ||
Sbjct 4833 ATCCAAACCATCCTCGCCGTAGACGAATTGAACAATGTCGCCGAGGGAATTTCGGACTGT 4774
Query 378180 CATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACC 378239
||||||| | | || | |||||| | |||||| | ||| || || |||||||||
Sbjct 4773 TCCATCATATTTGGCAATGACATCTTCAAGTGCTTTGACAAGACGACGTTGAATATAACC 4714
Query 378240 AGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAA 378299
||||| ||| || |||||||| || || | ||| |||||||| |||| || |||||
Sbjct 4713 AGTTTCGGCAGTCTTTACTGCAGTGTCGATGAGACCTTCACGACCAGCCATGGCGTGGAA 4654
Query 378300 GAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCC 378359
||| || || || || || | || | | | | || | || | || ||||||| |
Sbjct 4653 GAAAAACTCGGTTGGTGTTAACCCTCTGAGATACGAGTTTTCCACGAAACCTCTTGACTC 4594
Query 378360 TGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAAT 378419
||| |||| ||||| ||||| ||||||| | ||| || | | || || | |||||
Sbjct 4593 TGGGGAATAATCATCCTTTGTGAAATGAGGAAGTGTTCGGTATTTGAATCCGAAAGGAAT 4534
Query 378420 TCGTTTTCCATCAACATTCTGTTGACCAA 378448
|| ||||| |||||| ||||||||||
Sbjct 4533 ACGCTTTCCTTCAACAGATTGTTGACCAA 4505
Score = 111 bits (122), Expect = 5e-19
Identities = 119/154 (77%), Gaps = 5/154 (3%)
Strand=Plus/Minus
Query 377435 ATAATGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAA 377494
||| ||| ||| || ||||| || ||||||||| | || |||||| || || | |
Sbjct 5537 ATATTGAGAAT-TTCCTTCAGA-CGAGGCACACCAAGGGTGACATTC---TTGGAAGACA 5483
Query 377495 CACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCG 377554
|||| ||||| ||||||||||| || || | ||| |||| ||| || || || ||||| |
Sbjct 5482 CACCGGCAAAATGGAAAGTATTGAGCGTCATTTGCGTAGCGGGTTCTCCGATCGACTGAG 5423
Query 377555 CTGCAATAACGCCAACCATTTCTCCAGGATTGAC 377588
| |||| || |||||||||||||||||||||||
Sbjct 5422 CAGCAAGCACTCCAACCATTTCTCCAGGATTGAC 5389
>seq279
Length=21859
Score = 118 bits (130), Expect = 3e-21
Identities = 240/356 (67%), Gaps = 3/356 (1%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
||||| || |||| | ||| || | | || ||||||||| | || || ||||| |
Sbjct 18883 CCCGAGGAGGTTTCCGCCATGATTCTCGGAAAGATGAAGGAAGTCGCAGAGTCATATCTC 18942
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
||| ||| || | || ||| ||||||| ||||||||||| || || |||| |
Sbjct 18943 TCCAAAAAAGTCACCCACGCAGTTGTTACTGTTCCAGCCTATTTCAACGACAACCAGAGA 19002
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || |||||||| | |||||| || || || || || | | | || |||
Sbjct 19003 CAAGCCACCAAGGATGCTGGTATCATTGCCGGTTTGAACGTCCTCCGTGTCGTCAACGAA 19062
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
||||| || ||||| || || || || ||||| || | || | | || | | | ||
Sbjct 19063 CCCACCGCCGCAGCTATCGCCTACGGTCTTGACAA---GGTTGGCAAGGAGAGACAAATC 19119
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
|| | | ||| | ||||| || || || ||||| || || || | ||||||| ||
Sbjct 19120 ATTGTCTACGATCTCGGTGGAGGAACCTTCGATGTTTCCCTCCTCTCTATTGAAGATGGT 19179
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887
|||| || ||| | || |||||||| || ||| | ||||| || ||||| ||
Sbjct 19180 GTTTTCGAGGTTCTTTCTACCGCTGGTGACACCCATTTGGGTGGTGAGGATTTCGA 19235
>seq2868
Length=6797
Score = 93.3 bits (102), Expect = 1e-13
Identities = 475/740 (64%), Gaps = 27/740 (4%)
Strand=Plus/Minus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
|| || || ||||| |||||||| || || || ||| ||| || || || ||||||
Sbjct 3047 GCAGTCATCACTGTCCCAGCCTACTTCAACGACAACCAACGTCAAGCCACCAAGGATGCT 2988
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| |||||| || | || ||||| |||| || || || || ||||| || || ||
Sbjct 2987 GGTGCCATTGCCGGTCTTAACGTTCTCCGAATCATCAACGAGCCAACTGCCGCTGCTATC 2928
Query 349730 GCATATGGGCTTGAT-----AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATT 349784
||||| || || | | ||||| || | || |||| | | || | |||
Sbjct 2927 GCATACGGTCTCGGTGCCGGAAAATCCA--ACAAGGAGCGAAATGTCTTGATCTACGATC 2870
Query 349785 TAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAA-GTT 349843
| ||||| || ||||| ||||| || || || | || | || | | |||| | ||
Sbjct 2869 TCGGTGGAGGAACTTTCGATGTCTCCCTCCTTA-ACATCCAGGGAGGTGTTTTCACCGTC 2811
Query 349844 AAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCG 349903
|| || |||||||||||||| ||| | || || ||||||| ||| | | || | |||
Sbjct 2810 AAGGCCACTGCTGGTGATACCCATTTGGGAGGTCAAGATTTCGAT-ACCAACTTG-CTCG 2753
Query 349904 --CATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAG 349961
|| || || || || | | | | || | ||| | | | || | | |
Sbjct 2752 ACCACTTCAAGAAGGAGTTCACAAGAAAGACCAAGAAGGATTTGTCCGGTGATGCCCGTG 2693
Query 349962 CAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTAC--TAC 350019
| | || || || | ||||| || || ||||||||| | | | || | || | |
Sbjct 2692 CTCTTCGACGTCTTCGTACTGCTTGCGAGCGTGCTAAGAGAAC--TCTCTCCAACGGTGC 2635
Query 350020 CCAAACCTCTATTGAAATTGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTATTA 350078
|||||| || |||| |||||||| |||| | ||||| | || ||| | || |
Sbjct 2634 TCAAACCACTGTTGAGATTGATTC-CTTGTTCGATGGAGAGGACTTCAACGCTCAAATCA 2576
Query 350079 CACGTGCTCGGTTTGAAGAATT--ATGTATGGATCTTTTTAGAGCAACAATGGATCCTGT 350136
| |||||||| || || || || | | | | || | | || | || || ||
Sbjct 2575 CCCGTGCTCGTTTCGAGGACTTGAACTCAAAGGCC--TTCAATGGTACTTTAGACCCAGT 2518
Query 350137 GGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGT 350196
| | ||||| || ||||| || || || | || |||| ||| | || | ||
Sbjct 2517 CGCCCAGGTATTGAAGGATGCCAACATCGATAAGAGCAAGGTTGACGAAATTGTGCTTGT 2458
Query 350197 TGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAA 350256
|||||| || || ||||||||| | ||| || | || || || ||| | ||| |
Sbjct 2457 TGGTGGATCCACCCGTATTCCACGGATACAAAAGCTCCTCAGCGATTTCTTTGACGGC-A 2399
Query 350257 AGAACCTTCTAGATCA--ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAG 350314
|||| | || ||| | || || || ||||| ||||||||||| ||||| ||||| ||
Sbjct 2398 AGAAGC-TCGAGAAGAGCATCAACCCTGATGAGGCTGTTGCATACGGTGCCGCTGTCCAA 2340
Query 350315 GCATCTATTTTATCTGGAAA 350334
|| |||||| || |||||
Sbjct 2339 GCTGGTATTTTGTCAGGAAA 2320
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515065130993447
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