Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1315 205 1e-47 seq2965 132 5e-26 >seq1315 Length=11532 Score = 205 bits (226), Expect = 1e-47 Identities = 556/842 (66%), Gaps = 18/842 (2%) Strand=Plus/Plus Query 79054 AGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTG 79113 |||||||||| |||||| || || ||| || || | | |||| || || || Sbjct 322 AGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGACAATCTCAGTA 381 Query 79114 CACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCG 79173 ||||| || || | |||||| || | ||||| ||||||||||| ||| || || Sbjct 382 CACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCA 441 Query 79174 TCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAG 79233 |||||||| |||| | || | ||||||||| ||| || ||| | || ||| Sbjct 442 TCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTACCAA 501 Query 79234 ATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGC-----GAC--GTACGTCCG 79286 | | ||||| || | ||| ||| |||||| ||| ||| ||| || Sbjct 502 AGCTTTTGGGCCTTGA-----TGCTTTTAC-GACCCT-TGCCCTCAGACTCGTATTTCTC 554 Query 79287 GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCA 79346 ||||| | | ||| | || || ||||| |||| || ||| || ||||||| ||||| Sbjct 555 ATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGCA 614 Query 79347 CATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406 ||||| |||||| || ||| ||||| || ||||||||| || || ||||| || Sbjct 615 CATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAG 674 Query 79407 GGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAG 79466 || |||||| || ||| ||| | |||||| | || |||||| || || ||||| Sbjct 675 AGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAG 734 Query 79467 AAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTT 79526 || || | | || |||||||| ||||| || || |||||||| | ||| ||||| Sbjct 735 GAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACGCTT 794 Query 79527 GCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGAT 79586 | || || || | || || ||||| ||||||||||||||||| ||||| || ||||| Sbjct 795 GTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGAT 854 Query 79587 GCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGC-CCGAATGTTCGAGC 79645 |||| || | ||||| || || || | |||| | || | || | | || | Sbjct 855 TCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTGAAC 914 Query 79646 AGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGT 79705 | | || || || || || | ||| || || || || ||| | || || | Sbjct 915 A-TTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTGTCAT 973 Query 79706 AGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT 79765 |||| || || || ||| |||||||| ||| |||||||| || | ||| | | Sbjct 974 AGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGT-GCT 1032 Query 79766 TGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATC 79824 ||| ||||| || ||| || || || | ||||| |||||| | || | |||| Sbjct 1033 TGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGACATC 1092 Query 79825 AGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGC 79884 | | ||| ||||| || | | | || || |||||||| ||||| ||||| ||| Sbjct 1093 AAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTCCGACAGCGACACGC 1152 Query 79885 AT 79886 || Sbjct 1153 AT 1154 Score = 185 bits (204), Expect = 1e-41 Identities = 407/603 (67%), Gaps = 8/603 (1%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| ||||| ||||| ||||| || || || | | | | |||||| ||| || Sbjct 1154 ATGCGTGTCGCTGTCGGAATCCACGGTGAGGATATTGAGGCTGCCATCGAGACCTACAAC 1095 Query 19178 CTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAA 19236 ||||| |||| || | |||||| ||||| | || || |||||| || ||||| | Sbjct 1094 TTGATGT-CCAGCAAATACTTCACCCACGCCTCACCAACACTTTTCGCTGCTGGTAC--A 1038 Query 19237 CAACCCGCAGA--TGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294 | || ||| | | || || ||||| | | |||||||| ||||||||||| || Sbjct 1037 CCACAAGCACAACTTTCATCATGCTTCCTTATCGACATGAAGGAGGACAGCATTGATGGT 978 Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354 ||||| || || | ||| || || || || ||| | || ||||| || || Sbjct 977 ATCTATGACACATTGAAGATTTGTGCCATGATTTCAAAGAACGCTGGTGGTATTGGTCTC 918 Query 19355 CACTGCTCGAATA-TCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413 | || || | | |||| | | ||| | || ||| || |||||| || | Sbjct 917 AA-TGTTCACAGAATCCGTGCAACCGGTGCTTACATTGCTGGTACAAACGGAAACTCCAA 859 Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473 ||| ||||| || ||||| || || ||||||||||| ||| | || || | || || || Sbjct 858 CGGAATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCCCGATATGTTGATCAAGGTGG 799 Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533 ||| || || | |||||||| ||||| |||||||||||||| || || | || Sbjct 798 TAACAAGCGTCCTGGTGCTTTCGCCATTTACCTTGAGCCATGGCACGCTGATGTTTTCGA 739 Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593 |||||||| || || |||||| || | |||||| | || || || |||||| Sbjct 738 GTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTA 679 Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653 || | |||||||| || || |||||| || ||||| ||| || || ||| | Sbjct 678 CGCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTCGACTGGACATT 619 Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTT 19713 ||||||||| |||| || |||||| | ||||||||||||| || | |||| | | || Sbjct 618 GATGTGCCCTAACGAGTGTCCTGGCTTGGCCGACGTCTACGGTGACGAGTTCGAGGCTTT 559 Query 19714 GTA 19716 ||| Sbjct 558 GTA 556 >seq2965 Length=6591 Score = 132 bits (146), Expect = 5e-26 Identities = 307/451 (68%), Gaps = 10/451 (2%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| ||||||||| | || ||||| ||| || || ||||||||| ||| || ||| Sbjct 5852 TTTGCTCAACGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTTC 5911 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 | || |||||| | || ||||||||||||||| | || || | |||||||||||| Sbjct 5912 GCATCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAG 5971 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTA 60152 |||| ||||| |||||||| ||||| || || ||| || | ||| ||| | || Sbjct 5972 TTGATCTCCCGTGACGAGGGTCTCCACACCGACTTCGCA-TG-CCTTCTCTTCTC-CCAC 6028 Query 60153 TTGGAAAAATGCCCTTCCAAGG--ATATTCACAAG-ATTGTTCAGTG-GGCTTGTGAAGT 60208 ||| | | |||| |||| | || |||| | ||| | |||| ||| | Sbjct 6029 TTGAAGCATCGCCCAAGTAAGGCAGCAGTC-CAAGCCGTCATCACCGAGGCTGTTGAGAT 6087 Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268 ||| |||||| | || || || ||||| || || | || ||| |||| Sbjct 6088 TGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACGCCAACTT 6147 Query 60269 AATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACC 60328 |||| ||| |||||| |||| ||||| || || ||| | | | | | | || || Sbjct 6148 GATGAAGCAATACATTGAGTTCGTCGCTGATCGGCTCCT-CCTCTCTCTCGGTAATGAAA 6206 Query 60329 A-ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGA 60387 | ||||| || ||||| ||||||| ||||||| |||||| | | || |||| Sbjct 6207 AGGTTTACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGA 6266 Query 60388 CCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||| |||||||| |||| ||||| Sbjct 6267 CCAACTTCTTCGAGAAGCGTGTCGCTGATTA 6297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548457955396560