Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 205 1e-47
seq2965 132 5e-26
>seq1315
Length=11532
Score = 205 bits (226), Expect = 1e-47
Identities = 556/842 (66%), Gaps = 18/842 (2%)
Strand=Plus/Plus
Query 79054 AGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTG 79113
|||||||||| |||||| || || ||| || || | | |||| || || ||
Sbjct 322 AGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGACAATCTCAGTA 381
Query 79114 CACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCG 79173
||||| || || | |||||| || | ||||| ||||||||||| ||| || ||
Sbjct 382 CACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCA 441
Query 79174 TCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAG 79233
|||||||| |||| | || | ||||||||| ||| || ||| | || |||
Sbjct 442 TCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTACCAA 501
Query 79234 ATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGC-----GAC--GTACGTCCG 79286
| | ||||| || | ||| ||| |||||| ||| ||| ||| ||
Sbjct 502 AGCTTTTGGGCCTTGA-----TGCTTTTAC-GACCCT-TGCCCTCAGACTCGTATTTCTC 554
Query 79287 GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCA 79346
||||| | | ||| | || || ||||| |||| || ||| || ||||||| |||||
Sbjct 555 ATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGCA 614
Query 79347 CATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406
||||| |||||| || ||| ||||| || ||||||||| || || ||||| ||
Sbjct 615 CATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAG 674
Query 79407 GGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAG 79466
|| |||||| || ||| ||| | |||||| | || |||||| || || |||||
Sbjct 675 AGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAG 734
Query 79467 AAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTT 79526
|| || | | || |||||||| ||||| || || |||||||| | ||| |||||
Sbjct 735 GAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACGCTT 794
Query 79527 GCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGAT 79586
| || || || | || || ||||| ||||||||||||||||| ||||| || |||||
Sbjct 795 GTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGAT 854
Query 79587 GCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGC-CCGAATGTTCGAGC 79645
|||| || | ||||| || || || | |||| | || | || | | || |
Sbjct 855 TCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTGAAC 914
Query 79646 AGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGT 79705
| | || || || || || | ||| || || || || ||| | || || |
Sbjct 915 A-TTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTGTCAT 973
Query 79706 AGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT 79765
|||| || || || ||| |||||||| ||| |||||||| || | ||| | |
Sbjct 974 AGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGT-GCT 1032
Query 79766 TGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATC 79824
||| ||||| || ||| || || || | ||||| |||||| | || | ||||
Sbjct 1033 TGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGACATC 1092
Query 79825 AGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGC 79884
| | ||| ||||| || | | | || || |||||||| ||||| ||||| |||
Sbjct 1093 AAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTCCGACAGCGACACGC 1152
Query 79885 AT 79886
||
Sbjct 1153 AT 1154
Score = 185 bits (204), Expect = 1e-41
Identities = 407/603 (67%), Gaps = 8/603 (1%)
Strand=Plus/Minus
Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177
||||| ||||| ||||| ||||| || || || | | | | |||||| ||| ||
Sbjct 1154 ATGCGTGTCGCTGTCGGAATCCACGGTGAGGATATTGAGGCTGCCATCGAGACCTACAAC 1095
Query 19178 CTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAA 19236
||||| |||| || | |||||| ||||| | || || |||||| || ||||| |
Sbjct 1094 TTGATGT-CCAGCAAATACTTCACCCACGCCTCACCAACACTTTTCGCTGCTGGTAC--A 1038
Query 19237 CAACCCGCAGA--TGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294
| || ||| | | || || ||||| | | |||||||| ||||||||||| ||
Sbjct 1037 CCACAAGCACAACTTTCATCATGCTTCCTTATCGACATGAAGGAGGACAGCATTGATGGT 978
Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354
||||| || || | ||| || || || || ||| | || ||||| || ||
Sbjct 977 ATCTATGACACATTGAAGATTTGTGCCATGATTTCAAAGAACGCTGGTGGTATTGGTCTC 918
Query 19355 CACTGCTCGAATA-TCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413
| || || | | |||| | | ||| | || ||| || |||||| || |
Sbjct 917 AA-TGTTCACAGAATCCGTGCAACCGGTGCTTACATTGCTGGTACAAACGGAAACTCCAA 859
Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473
||| ||||| || ||||| || || ||||||||||| ||| | || || | || || ||
Sbjct 858 CGGAATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCCCGATATGTTGATCAAGGTGG 799
Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533
||| || || | |||||||| ||||| |||||||||||||| || || | ||
Sbjct 798 TAACAAGCGTCCTGGTGCTTTCGCCATTTACCTTGAGCCATGGCACGCTGATGTTTTCGA 739
Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593
|||||||| || || |||||| || | |||||| | || || || ||||||
Sbjct 738 GTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTA 679
Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653
|| | |||||||| || || |||||| || ||||| ||| || || ||| |
Sbjct 678 CGCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTCGACTGGACATT 619
Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTT 19713
||||||||| |||| || |||||| | ||||||||||||| || | |||| | | ||
Sbjct 618 GATGTGCCCTAACGAGTGTCCTGGCTTGGCCGACGTCTACGGTGACGAGTTCGAGGCTTT 559
Query 19714 GTA 19716
|||
Sbjct 558 GTA 556
>seq2965
Length=6591
Score = 132 bits (146), Expect = 5e-26
Identities = 307/451 (68%), Gaps = 10/451 (2%)
Strand=Plus/Plus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032
||||| ||||||||| | || ||||| ||| || || ||||||||| ||| || |||
Sbjct 5852 TTTGCTCAACGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTTC 5911
Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092
| || |||||| | || ||||||||||||||| | || || | ||||||||||||
Sbjct 5912 GCATCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAG 5971
Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTA 60152
|||| ||||| |||||||| ||||| || || ||| || | ||| ||| | ||
Sbjct 5972 TTGATCTCCCGTGACGAGGGTCTCCACACCGACTTCGCA-TG-CCTTCTCTTCTC-CCAC 6028
Query 60153 TTGGAAAAATGCCCTTCCAAGG--ATATTCACAAG-ATTGTTCAGTG-GGCTTGTGAAGT 60208
||| | | |||| |||| | || |||| | ||| | |||| ||| |
Sbjct 6029 TTGAAGCATCGCCCAAGTAAGGCAGCAGTC-CAAGCCGTCATCACCGAGGCTGTTGAGAT 6087
Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268
||| |||||| | || || || ||||| || || | || ||| ||||
Sbjct 6088 TGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACGCCAACTT 6147
Query 60269 AATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACC 60328
|||| ||| |||||| |||| ||||| || || ||| | | | | | | || ||
Sbjct 6148 GATGAAGCAATACATTGAGTTCGTCGCTGATCGGCTCCT-CCTCTCTCTCGGTAATGAAA 6206
Query 60329 A-ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGA 60387
| ||||| || ||||| ||||||| ||||||| |||||| | | || ||||
Sbjct 6207 AGGTTTACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGA 6266
Query 60388 CCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
|||||||||| |||||||| |||| |||||
Sbjct 6267 CCAACTTCTTCGAGAAGCGTGTCGCTGATTA 6297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548457955396560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |