Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1315 210 2e-49 seq2965 100 3e-16 seq1687 93.3 5e-14 >seq1315 Length=11532 Score = 210 bits (232), Expect = 2e-49 Identities = 505/751 (67%), Gaps = 16/751 (2%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTACGA 53253 ||||| ||||| | || ||||||||||| || | | || || | ||||| ||| | Sbjct 1154 ATGCGTGTCGCTGTCGGAATCCACGGTGAGGATATTGAGGC-TGCCATCGAGACCTACAA 1096 Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 ||| ||| | || ||||| || |||||| | ||||| || ||| |||||||| Sbjct 1095 CTTGATGTCCAGCAAATACTTCACCCACGCCTCACCAACACTTTTCGCTGCTGGTACACC 1036 Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373 || | || | || |||||||| | | |||||||| ||| || || || || Sbjct 1035 ACAAGCACAACTTTCATCATGCTTCCTTATCGACATGAAGGAGGACAGCATTGATGGTAT 976 Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433 ||| || || | ||| |||||| || || ||| | |||||||| ||| || | Sbjct 975 CTATGACACATTGAAGATTTGTGCCATGATTTCAAAGAACGCTGGTGGTATTGGTCTCAA 916 Query 53434 CTGCTC---GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || || ||| ||||||| | ||| | || || || ||||| | || | Sbjct 915 -TGTTCACAGAA--TCCGTGCAACCGGTGCTTACATTGCTGGTACAAACGGAAACTCCAA 859 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 |||||||| |||||||| || || ||||||||||| ||||| || || | || ||||| Sbjct 858 CGGAATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCCCGATATGTTGATCAAGGTGG 799 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 | ||||| || | |||||||| ||||| ||||| |||||||| || || | || Sbjct 798 TAACAAGCGTCCTGGTGCTTTCGCCATTTACCTTGAGCCATGGCACGCTGATGTTTTCGA 739 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TA 53669 ||| ||||| || || ||| || || | || ||| | || |||||| || || || Sbjct 738 GTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTA 679 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 | ||||| |||||||| || ||||||||| | || || ||| || || ||| Sbjct 678 C-GCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTCGACTGGACAT 620 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 |||||||||| |||||||| || ||| | | ||||||||||| ||||| | | Sbjct 619 TGATGTGCCCTAACGAGTGTCCTGGCTTGGCCGACGTCTACGGTGACGAGTTCGAGGCTT 560 Query 53790 TGTATCGGACGTACGCAGT-TCAGGGC--CGCTACAAGAAGAAGGTCAAGGCGCGTGAGG 53846 ||||| || |||| ||| | ||||| | | | ||| | ||||||| | || Sbjct 559 TGTATGAGAAATACG-AGTCTGAGGGCAAGGGTCGTAAAAGCA--TCAAGGCCCAAAAGC 503 Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906 | ||| | | |||||| || || ||||| |||| || | |||| ||||||| Sbjct 502 TTTGGTACTCTATCCTCGAGGCTCAAACTGAGACCGGAAACCCTTTCATGCTTTACAAGG 443 Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 || | |||| ||||||||||| ||||| Sbjct 442 ATGCTTGCAACCGAAAGAGCAACCAAAAGAA 412 >seq2965 Length=6591 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 ||||| || || || || | ||| |||| ||| || ||||||||||||||||| |||||| Sbjct 5976 ATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATG 5917 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | ||| ||||||||||||||||| || || || |||||||| || || ||||| Sbjct 5916 GATGCGAAAGAACCACTGAAGAAGATACCCTCAACGGCAGCAAAGGCAACGAGACGTTGA 5857 Query 74904 GCGAA 74908 || || Sbjct 5856 GCAAA 5852 >seq1687 Length=10000 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || ||||||||||||| ||||| ||||| |||| ||||| ||||| |||| || | | Sbjct 3145 GTAAAAATGTAACGAGGACTTGCCGCATCAGTGCCTCCAGCGAGACGACTACCAAAATTT 3086 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT-TGAC 117423 ||||| ||||| | |||| ||||| | || ||||| ||||| | ||||| | Sbjct 3085 CCACTTGGCTCGAGACAATTCACATTGTTAGATCCAACAAAATTTTGCG-CAAGTCCAAT 3027 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 |||||| || | | || ||||| ||||| || || || | |||| ||||| || Sbjct 3026 AATCGTCTGATGCATGGAAGCTTCACCGTGGTGGTAAGCAGTGTTTTCCGAAACGTATCC 2967 Query 117484 CGCCAGCTGAGCCACCTTCATGTCT 117508 ||| || |||||||||| ||| Sbjct 2966 ACCCAACTCGACCACCTTCATATCT 2942 Score = 86.0 bits (94), Expect = 7e-12 Identities = 292/446 (65%), Gaps = 12/446 (3%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || || || ||||| |||| |||| ||| ||||||||||| ||| | | Sbjct 3298 CCAGTACCAATTCCATCAGCACCATTGATAAGAACCATTGGCACAATAGGACAGTACATC 3239 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCAC-GTATTTCAAAACGGAATTGTCAGC--C 151992 || || | || | || || |||| ||| || || | | || | |||| | Sbjct 3238 GTTGGTTCAATCTTCTTTCCATCGTCCA-CACTGTGTTCGTAGATGGGCTCGTCAAGTAC 3180 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 || ||||| |||| | | || ||| | ||| || ||||| || | || ||| Sbjct 3179 TGA--GAATACTCGTCTCGCGAACGGCGACAATCTCGTAAAAATGTAACGAGGACTTGCC 3122 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 ||||| |||| || || || || | ||||| | |||| |||||||| || | Sbjct 3121 GCATCAGTGCCTCCAGCGAGACGACTACCAAAATTTCCACTTGGCTCGAGACAATTCACA 3062 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC-AATCGTGCCCTGCAGACTCGCTTC 152171 ||||| | || || ||||| || || || | || |||||| |||| ||||| Sbjct 3061 TTGTTAGATCCAACAAAATTTTGCGC-AAGTCCAATAATCGTCTGATGCATGGAAGCTTC 3003 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 ||||||||| || || || | |||| | |||||| |||||| |||||||||| || Sbjct 3002 ACCGTGGTGGTAAGCAGTGTTTTCCGAAACGTATCCACCCAACTCGACCACCTTCATATC 2943 Query 152232 CGTCG--TCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 ||| ||||| ||| | ||| || | || || || || || ||||| || Sbjct 2942 --TCGAACGAGGTTGCGCTTAAAACATGCAAACATGACTTTTCGTTGTCCAGGTTTGAAT 2885 Query 152290 CCGTCCACCACGTGAGGAATCGAACG 152315 ||||| | || |||||| ||||| Sbjct 2884 CCGTCGATGACCGAAGGAATAGAACG 2859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547149314890200