Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 210 2e-49
seq2965 100 3e-16
seq1687 93.3 5e-14
>seq1315
Length=11532
Score = 210 bits (232), Expect = 2e-49
Identities = 505/751 (67%), Gaps = 16/751 (2%)
Strand=Plus/Minus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTACGA 53253
||||| ||||| | || ||||||||||| || | | || || | ||||| ||| |
Sbjct 1154 ATGCGTGTCGCTGTCGGAATCCACGGTGAGGATATTGAGGC-TGCCATCGAGACCTACAA 1096
Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313
||| ||| | || ||||| || |||||| | ||||| || ||| ||||||||
Sbjct 1095 CTTGATGTCCAGCAAATACTTCACCCACGCCTCACCAACACTTTTCGCTGCTGGTACACC 1036
Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373
|| | || | || |||||||| | | |||||||| ||| || || || ||
Sbjct 1035 ACAAGCACAACTTTCATCATGCTTCCTTATCGACATGAAGGAGGACAGCATTGATGGTAT 976
Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433
||| || || | ||| |||||| || || ||| | |||||||| ||| || |
Sbjct 975 CTATGACACATTGAAGATTTGTGCCATGATTTCAAAGAACGCTGGTGGTATTGGTCTCAA 916
Query 53434 CTGCTC---GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| || ||| ||||||| | ||| | || || || ||||| | || |
Sbjct 915 -TGTTCACAGAA--TCCGTGCAACCGGTGCTTACATTGCTGGTACAAACGGAAACTCCAA 859
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|||||||| |||||||| || || ||||||||||| ||||| || || | || |||||
Sbjct 858 CGGAATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCCCGATATGTTGATCAAGGTGG 799
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
| ||||| || | |||||||| ||||| ||||| |||||||| || || | ||
Sbjct 798 TAACAAGCGTCCTGGTGCTTTCGCCATTTACCTTGAGCCATGGCACGCTGATGTTTTCGA 739
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TA 53669
||| ||||| || || ||| || || | || ||| | || |||||| || || ||
Sbjct 738 GTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTA 679
Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729
| ||||| |||||||| || ||||||||| | || || ||| || || |||
Sbjct 678 C-GCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTCGACTGGACAT 620
Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789
|||||||||| |||||||| || ||| | | ||||||||||| ||||| | |
Sbjct 619 TGATGTGCCCTAACGAGTGTCCTGGCTTGGCCGACGTCTACGGTGACGAGTTCGAGGCTT 560
Query 53790 TGTATCGGACGTACGCAGT-TCAGGGC--CGCTACAAGAAGAAGGTCAAGGCGCGTGAGG 53846
||||| || |||| ||| | ||||| | | | ||| | ||||||| | ||
Sbjct 559 TGTATGAGAAATACG-AGTCTGAGGGCAAGGGTCGTAAAAGCA--TCAAGGCCCAAAAGC 503
Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906
| ||| | | |||||| || || ||||| |||| || | |||| |||||||
Sbjct 502 TTTGGTACTCTATCCTCGAGGCTCAAACTGAGACCGGAAACCCTTTCATGCTTTACAAGG 443
Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937
|| | |||| ||||||||||| |||||
Sbjct 442 ATGCTTGCAACCGAAAGAGCAACCAAAAGAA 412
>seq2965
Length=6591
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843
||||| || || || || | ||| |||| ||| || ||||||||||||||||| ||||||
Sbjct 5976 ATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATG 5917
Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903
| ||| ||||||||||||||||| || || || |||||||| || || |||||
Sbjct 5916 GATGCGAAAGAACCACTGAAGAAGATACCCTCAACGGCAGCAAAGGCAACGAGACGTTGA 5857
Query 74904 GCGAA 74908
|| ||
Sbjct 5856 GCAAA 5852
>seq1687
Length=10000
Score = 93.3 bits (102), Expect = 5e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|| ||||||||||||| ||||| ||||| |||| ||||| ||||| |||| || | |
Sbjct 3145 GTAAAAATGTAACGAGGACTTGCCGCATCAGTGCCTCCAGCGAGACGACTACCAAAATTT 3086
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT-TGAC 117423
||||| ||||| | |||| ||||| | || ||||| ||||| | ||||| |
Sbjct 3085 CCACTTGGCTCGAGACAATTCACATTGTTAGATCCAACAAAATTTTGCG-CAAGTCCAAT 3027
Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483
|||||| || | | || ||||| ||||| || || || | |||| ||||| ||
Sbjct 3026 AATCGTCTGATGCATGGAAGCTTCACCGTGGTGGTAAGCAGTGTTTTCCGAAACGTATCC 2967
Query 117484 CGCCAGCTGAGCCACCTTCATGTCT 117508
||| || |||||||||| |||
Sbjct 2966 ACCCAACTCGACCACCTTCATATCT 2942
Score = 86.0 bits (94), Expect = 7e-12
Identities = 292/446 (65%), Gaps = 12/446 (3%)
Strand=Plus/Minus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|| ||||| || || || ||||| |||| |||| ||| ||||||||||| ||| | |
Sbjct 3298 CCAGTACCAATTCCATCAGCACCATTGATAAGAACCATTGGCACAATAGGACAGTACATC 3239
Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCAC-GTATTTCAAAACGGAATTGTCAGC--C 151992
|| || | || | || || |||| ||| || || | | || | |||| |
Sbjct 3238 GTTGGTTCAATCTTCTTTCCATCGTCCA-CACTGTGTTCGTAGATGGGCTCGTCAAGTAC 3180
Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052
|| ||||| |||| | | || ||| | ||| || ||||| || | || |||
Sbjct 3179 TGA--GAATACTCGTCTCGCGAACGGCGACAATCTCGTAAAAATGTAACGAGGACTTGCC 3122
Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112
||||| |||| || || || || | ||||| | |||| |||||||| || |
Sbjct 3121 GCATCAGTGCCTCCAGCGAGACGACTACCAAAATTTCCACTTGGCTCGAGACAATTCACA 3062
Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC-AATCGTGCCCTGCAGACTCGCTTC 152171
||||| | || || ||||| || || || | || |||||| |||| |||||
Sbjct 3061 TTGTTAGATCCAACAAAATTTTGCGC-AAGTCCAATAATCGTCTGATGCATGGAAGCTTC 3003
Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231
||||||||| || || || | |||| | |||||| |||||| |||||||||| ||
Sbjct 3002 ACCGTGGTGGTAAGCAGTGTTTTCCGAAACGTATCCACCCAACTCGACCACCTTCATATC 2943
Query 152232 CGTCG--TCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289
||| ||||| ||| | ||| || | || || || || || ||||| ||
Sbjct 2942 --TCGAACGAGGTTGCGCTTAAAACATGCAAACATGACTTTTCGTTGTCCAGGTTTGAAT 2885
Query 152290 CCGTCCACCACGTGAGGAATCGAACG 152315
||||| | || |||||| |||||
Sbjct 2884 CCGTCGATGACCGAAGGAATAGAACG 2859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547149314890200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |