Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1315 203 4e-47 seq1973 170 2e-37 seq47 161 1e-34 seq231 149 7e-31 >seq1315 Length=11532 Score = 203 bits (224), Expect = 4e-47 Identities = 680/1039 (65%), Gaps = 37/1039 (4%) Strand=Plus/Plus Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GC 80783 ||||| || || || ||||||| || || || | ||| || || | || || || Sbjct 136 TCAGCAAGACCTTGGACGCCGAGAGCAATAGGTCTGTGACGGAAATT-GCTCTTTCTTGC 194 Query 80784 CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCG 80843 ||| |||| |||||| |||| |||||||| ||||| ||| ||||| | Sbjct 195 CTCAGGAACTGGGTAGTAGTTGACATCGATGATCTTGTTCAAGTTTTTGACGACAACTTG 254 Query 80844 TGTAACATCATGAAGTTTCTGAAAGTCG-AATTGG-----TTCCCCTTCACAAATGCCGG 80897 || || ||||| ||||| ||||| || ||| ||| | | ||| ||| || Sbjct 255 GCAGACTTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATATGTTGG 314 Query 80898 AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGAC 80954 || || || |||| ||||| || || ||||| |||| || | ||| ||||| Sbjct 315 GAGAGCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCA-CAGTAT--TCGAC 371 Query 80955 GATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGC 81014 || || || ||||| || || | || ||||| || || || ||||| ||| Sbjct 372 AATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCG 431 Query 81015 GTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGAT 81074 ||||||||| |||||||| |||| | ||| | |||||||| || | || |||||| Sbjct 432 GTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGAT 491 Query 81075 GGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTT 81134 | || ||||| || | ||||||| || || ||||| || | | | || || Sbjct 492 AGAGTACCAAAGCTTTTGGGCCTTGATGCTTTTACGACCCTTGCCCTCAGACTCGTATTT 551 Query 81135 GGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGG 81194 | || | ||||||| | |||||| | || | | | | || ||||||||||| Sbjct 552 CTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGG 611 Query 81195 GCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCA 81254 |||||||| ||||||| || || || ||| ||||||||| || || ||||| Sbjct 612 GCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCA 671 Query 81255 GAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTC 81314 ||| ||| ||| || || ||| || ||||||| | || ||||| || | || Sbjct 672 GAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTC 731 Query 81315 GAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CC 81368 ||| || || | | || || ||||||||||| || || | ||||| | || | Sbjct 732 GAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACG 791 Query 81369 CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGG 81428 |||| | ||||| || | || || ||||| || ||| || || || | |||||| Sbjct 792 CTTGTTA---CCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGG 848 Query 81429 GATGATACCATCTGACTGACCGTTCGTACC--CACGATACGCGACCCCTTGGCGCGCA-- 81484 | ||| || | || | ||||| ||||| || || || ||| || || || | Sbjct 849 AACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGC-ACCGGTT-GCACGGATT 906 Query 81485 CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCA 81544 | || |||| ||||| || ||||| | |||||||||| ||||| |||| Sbjct 907 CTGTGAACATTG--AGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCA 964 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACA 81604 || ||||| || || || ||||| || | |||||||| | | ||| || ||| | Sbjct 965 ATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAA 1024 Query 81605 TCTGAGGGCTTTT--TGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACG 81662 | | |||| | || || ||| ||| |||||||| | ||||| |||| || Sbjct 1025 GTT--GTGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTT 1082 Query 81663 GTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCGA 81721 | | ||||||| || ||||| || || | || | |||||| |||||||| || |||| Sbjct 1083 GCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCT-CAATATCCTCACCGTGGATTCCGA 1141 Query 81722 TAGCTACACGCATAAACAT 81740 ||| |||||||||| ||| Sbjct 1142 CAGCGACACGCATAATCAT 1160 >seq1973 Length=9094 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| |||||||||||||| || ||||| ||||| || || Sbjct 5908 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTCGAGGTCGAATCTTCA 5967 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || || ||||| |||||||| ||||| || || || Sbjct 5968 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCGGATCAA 6027 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || |||||||||||||| | || || || | ||||| ||| Sbjct 6028 CAGCGACTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAAT 6087 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||| | ||| | ||||| || ||||| Sbjct 6088 ATCCAGAAGGAGTCTACCCTTCATTTGGTCCTTCGTCTCCGTGGTGG 6134 Score = 150 bits (166), Expect = 2e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||||||||| | || |||||||| Sbjct 6136 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 6195 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || || ||||| |||||||| ||||| || || || Sbjct 6196 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCGGATCAA 6255 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | ||||| || || |||||| | ||||||| ||||||||| ||| ||||| || Sbjct 6256 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACCCTCAGC-GACTACAA 6314 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | |||||||| |||| | ||| | || | || ||||| || |||||| Sbjct 6315 CATTCAAAAGGAGAGCACTTTGCATTTGGTGCTTCGCCTTCGTGGAGGACAA 6366 Score = 149 bits (164), Expect = 7e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| | || |||||||| || ||||| || || || || |||||| ||| | Sbjct 5692 GTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTCGAATCCAGTGATACCATCGAC 5751 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || ||||||||||||||||| || || || ||||| ||||| || || Sbjct 5752 AATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCGGACCAACAGCGCCTTATC 5811 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||||| || |||||||||||||| | || || || | ||||| ||| |||| ||||| Sbjct 5812 TTTGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAATATCCAGAAGGAG 5871 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||| | || | ||||| || ||||| Sbjct 5872 TCTACCCTTCACTTGGTTCTCCGTCTCCGTGGTGG 5906 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || || ||||| ||||| || | ||| | || | ||| Sbjct 5420 ACCGGTAAGACCATCACCCTCGAGGTAGAGTCGTCGGACACCATAGACAACGTCAAGAGC 5479 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||||||||| || ||||||||||| || | || ||||| || ||| Sbjct 5480 AAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAACGCTTGATCTTTGCCGGAAAG 5539 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| |||||| ||| | || || || | || ||||| || ||||| || Sbjct 5540 CAGCTCGAGGATGGTCGTACTCTATCTGATTACAACATTCAGAAGGAGTCGACTCTCCAC 5599 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | |||||||| || || Sbjct 5600 CTCGTCCTCCGTCTTCGTGGCGG 5622 >seq47 Length=33200 Score = 161 bits (178), Expect = 1e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || || ||||||||||| || | ||| | ||| | ||| | Sbjct 24104 ACGGGCAAGACCATCACCCTAGAGGTTGAGTCTTCGGACACCATCGATAATGTTAAGTCC 24163 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||||||||| || || || |||||| | || || ||||| ||| Sbjct 24164 AAGATTCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGTTTGATCTTCGCTGGAAAG 24223 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||||||||| | |||||||| | ||||| || |||| ||||| || || |||||| Sbjct 24224 CAACTCGAGGACGGACGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 24283 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||||| ||||| || || ||| Sbjct 24284 CTCGTCTTACGTCTACGTGGAGGA 24307 >seq231 Length=23011 Score = 149 bits (164), Expect = 7e-31 Identities = 142/182 (78%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || || ||||| ||||| |||||||| ||||| || | || Sbjct 15523 CTTCGTCAAGACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGTCTTCGGACACTAT 15464 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | || || |||||||||||||||||||| || || || |||||| | Sbjct 15463 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGTTT 15404 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||| |||||||||||||||| || ||| | ||||||||||| ||||||| Sbjct 15403 GATCTTCGCTGGAAAGCAACTCGAGGATGGACGCACCTTGTCAGACTATAATATCCAAAA 15344 Query 27594 GG 27595 || Sbjct 15343 GG 15342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570240900548880