Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 111 1e-19
seq47 91.5 9e-14
>seq1973
Length=9094
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| || | ||||||||| | ||||||||||||||||||||| || ||
Sbjct 6362 CCTCCACGAAGGCGAAGCACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTG 6303
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || || | ||| || ||||| || || || |||||||| ||||| ||
Sbjct 6302 AGGGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGA 6243
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658
| |||||||| || |||| |||| || || || ||||||||| ||| ||
Sbjct 6242 ATACCCTCCTTATCCTGGATC-TTTGACTTGACATTATCAATTGTGTCCGAAGACTCAAC 6184
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| || || || || ||||| | || || || || ||||||||
Sbjct 6183 TTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136
Score = 91.5 bits (100), Expect = 9e-14
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | |||||| | || | |||||||| |||||| |||||||| ||||| ||
Sbjct 5622 CCGCCACGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGAT 5563
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || || || || || |||||||| || || || || ||||| || ||
Sbjct 5562 AGAGTACGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAAGCGTTGCTGGTCTGGGGGG 5503
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| |||||||||||| ||||||
Sbjct 5502 ATTCCCTCCTTGTCCTGGATCTT 5480
Score = 86.0 bits (94), Expect = 4e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || || || |||||| || || || || || || ||||| ||
Sbjct 5897 AGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGG 5838
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || ||||| || |||||||| || | |||||||||||||| || | ||||||
Sbjct 5837 CCGTCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGTCCGGTGGGATGCCCTCC 5778
Query 34609 TTGTC 34613
|||||
Sbjct 5777 TTGTC 5773
>seq47
Length=33200
Score = 91.5 bits (100), Expect = 9e-14
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| || || | ||| || || |||||| || ||||| || || ||||| || ||
Sbjct 24297 AGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGT 24238
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || ||||| || || || || || ||||||||||| ||||| || | |||||||
Sbjct 24237 CCGTCCTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTGGAATTCCCTCC 24178
Query 34609 TTGTC 34613
|||||
Sbjct 24177 TTGTC 24173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314692205107517
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |