Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1973 147 2e-30 seq47 100 2e-16 >seq1973 Length=9094 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||||||||||||| ||||||| | ||||| || | || Sbjct 6136 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 6195 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||| || || || || || || || ||||| |||||| Sbjct 6196 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCGGATCAA 6255 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||||||| |||||||| || || ||| | ||| |||||| Sbjct 6256 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACCCTCAGCGACTACAAC 6315 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||||||||| || || |||||||| Sbjct 6316 ATTCAAAAGGAGAGCACTTTGCATTTGGT 6344 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| ||||||||| | || ||||| || || ||| | || Sbjct 5908 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTCGAGGTCGAATCTTCA 5967 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||| || || || || || || || ||||| |||||| Sbjct 5968 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCGGATCAA 6027 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| ||| | || ||| | || | ||||| ||||| Sbjct 6028 CAGCGACTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAAT 6087 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | |||||||| | ||| | || ||||| || Sbjct 6088 ATCCAGAAGGAGTCTACCCTTCATTTGGTCCTTCGTCTCCGTGGTGGTAT 6137 >seq47 Length=33200 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || |||||| | || || || || || || | || ||| | || || | || || Sbjct 24104 ACGGGCAAGACCATCACCCTAGAGGTTGAGTCTTCGGACACCATCGATAATGTTAAGTCC 24163 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||| ||||| || || || ||||| |||||||||||||| || | ||| || || Sbjct 24164 AAGATTCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGTTTGATCTTCGCTGGAAAG 24223 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||| | || ||| | ||| |||| || |||||||| || |||||||||||| | ||| Sbjct 24224 CAACTCGAGGACGGACGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 24283 Query 27192 TTGGTTTTGCGTTTGCGGGGTGG 27214 | || || ||| | || || || Sbjct 24284 CTCGTCTTACGTCTACGTGGAGG 24306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434865399756480