Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq47 150 4e-31
seq1973 149 1e-30
seq231 125 2e-23
>seq47
Length=33200
Score = 150 bits (166), Expect = 4e-31
Identities = 155/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || ||| || ||||| || ||||| || |||||||| || |||| |||
Sbjct 24304 TCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAG 24245
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | ||| || || || ||||| || |||||||| | || ||||| || || ||||
Sbjct 24244 GGTACGTCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTGGAAT 24185
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||| ||||||||||| ||||| || || || ||||||||||| || ||||||||
Sbjct 24184 TCCCTCCTTGTCCTGAATCTTGGACTTAACATTATCGATGGTGTCCGAAGACTCAACCTC 24125
Query 211070 GAGAGTGATCGTCTTTCCCGTGA 211092
|| ||||| ||||| |||||||
Sbjct 24124 TAGGGTGATGGTCTTGCCCGTGA 24102
>seq1973
Length=9094
Score = 149 bits (164), Expect = 1e-30
Identities = 153/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| ||||| ||||| ||||| || || ||||| ||||| | || ||
Sbjct 5617 ACGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGATAGAGT 5558
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || |||||||| || || ||||| | |||||| ||||| || || | |||
Sbjct 5557 ACGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAAGCGTTGCTGGTCTGGGGGGATTCC 5498
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || ||||| || |||||||| || || ||||||||
Sbjct 5497 CTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCTATGGTGTCCGACGACTCTACCTCGAG 5438
Query 211073 AGTGATCGTCTTTCCCGTGA 211092
||||| ||||| || ||||
Sbjct 5437 GGTGATGGTCTTACCGGTGA 5418
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||||| || ||||| || ||||| || || || | || || | || ||
Sbjct 6119 AGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCC 6060
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| ||||| || || || ||||| || || |||| || ||||| |||
Sbjct 6059 TCGAGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGAATACCCTCCTTATCC 6000
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||||||| || || || || || ||||| || ||| |||||||||||||| |||
Sbjct 5999 TGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTCGACCTCGAGAGTGATGGTC 5940
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || |||||||| || || | |||||
Sbjct 5939 TTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 5908
Score = 127 bits (140), Expect = 5e-24
Identities = 148/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | |||||| || ||||| || ||||| || || || | || || | || ||
Sbjct 5891 AGAACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCC 5832
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| || ||||||||||| |||||||| || || | || |||||||||
Sbjct 5831 TCGAGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCC 5772
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || |||||||| ||| | ||| || ||||||||||| |||
Sbjct 5771 TGAATCTTCGACTTGACATTGTCGATGGTATCACTGGATTCGACTTCGAGAGTGATGGTC 5712
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| || || | ||||| ||
Sbjct 5711 TTGCCAGTCAAGGTCTTGAC 5692
Score = 113 bits (124), Expect = 1e-19
Identities = 160/225 (71%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || || | || | |||| ||| ||||| ||||| || || ||
Sbjct 6360 TCCACGAAGGCGAAGCACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTGAG 6301
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | ||||| |||| |||||||| ||||| || | || ||||| || || ||||
Sbjct 6300 GGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAAT 6241
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||| |||||||||||| || || || || || ||||| || ||||| ||
Sbjct 6240 ACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTC 6181
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| || || ||||| || || |||||||| || || | ||||||
Sbjct 6180 CAATGTAATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136
>seq231
Length=23011
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|||||||| ||||| || | | ||| | |||||| || || ||||| || ||||||||
Sbjct 15344 TTTTGGATATTATAGTCTGACAAGGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 15403
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || ||||| || || |||| ||| ||||||||||||||||| || || || |||
Sbjct 15404 AAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 15463
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| || || ||||| || || || ||||| |||||||| ||||| || ||
Sbjct 15464 ATAGTGTCCGAAGACTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAA 15522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159007211410385
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |