Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 111 1e-19
seq47 95.1 8e-15
>seq1973
Length=9094
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||| || || || || || || || || | |||||||| || ||
Sbjct 6136 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 6195
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || |||| | | || || || ||| | || || |||||
Sbjct 6196 GACACAATTGATAATGTCAAGTCAAAGA-TCCAGGATAAGGAGGGTATTCCACCGGATCA 6254
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| || || || |||||||| ||| |||| || | || || | |||| |||||
Sbjct 6255 ACAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACCCTCAGCGACTACAA 6314
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| ||||| ||| ||| || ||||| ||
Sbjct 6315 CATTCAAAAGGAGAGCACTTTGCATTTGGT 6344
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || || || || || || || ||||||||||| || || || |
Sbjct 5908 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTCGAGGTCGAATCTTCA 5967
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | ||| || || || || ||| | || || |||||
Sbjct 5968 GACACAATTGATAATGTCAAGTC-AAAGATCCAGGATAAGGAGGGTATTCCACCGGATCA 6026
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || |||||||| ||||| || |||| ||||| | ||| |||||
Sbjct 6027 ACAGCGACTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAA 6086
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
|| || || ||||| || | ||||| ||
Sbjct 6087 TATCCAGAAGGAGTCTACCCTTCATTTGGT 6116
Score = 86.0 bits (94), Expect = 4e-12
Identities = 141/201 (70%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680
|||| || ||| | || || || || |||||||||||||| || |||| || || | |
Sbjct 5690 TCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTCGAATCCAGTGATACCATCG 5749
Query 23681 A-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739
| ||| | || | || | || ||||| || || | || || || |||||||| |
Sbjct 5750 ACAATGTCAAGTCGAAGA-TTCAGGACAAGGAGGGCATCCCACCGGACCAACAGCGCCTT 5808
Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799
|| ||||||||||| ||||| || |||| ||||| | ||| ||||| || || ||
Sbjct 5809 ATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAATATCCAGAAG 5868
Query 23800 GAGTCCACATTACATTTAGTT 23820
||||| || | || || |||
Sbjct 5869 GAGTCTACCCTTCACTTGGTT 5889
>seq47
Length=33200
Score = 95.1 bits (104), Expect = 8e-15
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 23633 TCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAA 23691
||||||| || || ||||| || || ||||| || ||||||| | || ||| ||||
Sbjct 24102 TCACGGGCAAGACCATCACCCTAGAGGTTGAGTCTTCGGACACCATCGATAATGTTAAGT 24161
Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751
| || | || ||||| || || | || || |||||||||||||| || || || ||
Sbjct 24162 CCAAGA-TTCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGTTTGATCTTCGCTGGA 24220
Query 23752 AAACAACTGGAAGACGAACG--CACTTTAGGCGATTACAACATACAAAAAGAGTCCACAT 23809
|| ||||| || |||| ||| | |||| | || |||||||| || || ||||| ||
Sbjct 24221 AAGCAACTCGAGGACGGACGTACCCTTTCG--GACTACAACATCCAGAAGGAGTCGACCC 24278
Query 23810 TACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
| ||| | || ||| | | || ||||||
Sbjct 24279 TTCATCTCGTCTTACGTCTACGTGGAGGA 24307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337969439072492
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |