Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1973 111 1e-19 seq47 95.1 8e-15 >seq1973 Length=9094 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || || || || || || || || | |||||||| || || Sbjct 6136 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 6195 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | || || || ||| | || || ||||| Sbjct 6196 GACACAATTGATAATGTCAAGTCAAAGA-TCCAGGATAAGGAGGGTATTCCACCGGATCA 6254 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || || |||||||| ||| |||| || | || || | |||| ||||| Sbjct 6255 ACAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACCCTCAGCGACTACAA 6314 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| ||| ||| || ||||| || Sbjct 6315 CATTCAAAAGGAGAGCACTTTGCATTTGGT 6344 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || || || || || || ||||||||||| || || || | Sbjct 5908 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTCGAGGTCGAATCTTCA 5967 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | ||| || || || || ||| | || || ||||| Sbjct 5968 GACACAATTGATAATGTCAAGTC-AAAGATCCAGGATAAGGAGGGTATTCCACCGGATCA 6026 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||| || |||| ||||| | ||| ||||| Sbjct 6027 ACAGCGACTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAA 6086 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || | ||||| || Sbjct 6087 TATCCAGAAGGAGTCTACCCTTCATTTGGT 6116 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680 |||| || ||| | || || || || |||||||||||||| || |||| || || | | Sbjct 5690 TCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTCGAATCCAGTGATACCATCG 5749 Query 23681 A-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739 | ||| | || | || | || ||||| || || | || || || |||||||| | Sbjct 5750 ACAATGTCAAGTCGAAGA-TTCAGGACAAGGAGGGCATCCCACCGGACCAACAGCGCCTT 5808 Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799 || ||||||||||| ||||| || |||| ||||| | ||| ||||| || || || Sbjct 5809 ATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAATATCCAGAAG 5868 Query 23800 GAGTCCACATTACATTTAGTT 23820 ||||| || | || || ||| Sbjct 5869 GAGTCTACCCTTCACTTGGTT 5889 >seq47 Length=33200 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 23633 TCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAA 23691 ||||||| || || ||||| || || ||||| || ||||||| | || ||| |||| Sbjct 24102 TCACGGGCAAGACCATCACCCTAGAGGTTGAGTCTTCGGACACCATCGATAATGTTAAGT 24161 Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751 | || | || ||||| || || | || || |||||||||||||| || || || || Sbjct 24162 CCAAGA-TTCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGTTTGATCTTCGCTGGA 24220 Query 23752 AAACAACTGGAAGACGAACG--CACTTTAGGCGATTACAACATACAAAAAGAGTCCACAT 23809 || ||||| || |||| ||| | |||| | || |||||||| || || ||||| || Sbjct 24221 AAGCAACTCGAGGACGGACGTACCCTTTCG--GACTACAACATCCAGAAGGAGTCGACCC 24278 Query 23810 TACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | ||| | || ||| | | || |||||| Sbjct 24279 TTCATCTCGTCTTACGTCTACGTGGAGGA 24307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337969439072492