Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq28 134 3e-26 seq1973 114 3e-20 seq47 105 2e-17 seq231 102 2e-16 >seq28 Length=36639 Score = 134 bits (148), Expect = 3e-26 Identities = 214/301 (71%), Gaps = 7/301 (2%) Strand=Plus/Plus Query 7429 AAGGAACTGGAAACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGG-TACTAT 7487 ||||| | | ||| |||||||||||||||| | ||||| || ||||| || ||| Sbjct 34047 AAGGATATAGGAACATTATATTTAATATTTGCTTTATTTTCAGG-ATTATTGGGTACAGC 34105 Query 7488 ATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTA 7546 |||||| | ||||||| |||||||| | || ||| |||| |||||| | || Sbjct 34106 TTTTTCTGTTCTTATAAGACTAGAATTAAGCGGACCTGGTGTTCAATATATTGCA-GATA 34164 Query 7547 ATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTG 7606 || ||| | ||||| | || || || || || || | | ||||| |||||| | | Sbjct 34165 AT---CAATTATACAATGCGATCATAACTGCCCACGCAATATTAATGATATTCTTTATGG 34221 Query 7607 TTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTC 7666 ||||||| | | | ||||| || |||||||| | || | || ||| | | || | || Sbjct 34222 TTATGCCAGCTTTAATAGGTGGATTCGGAAACTTTTTATTACCATTACTAGTAGGGGGTC 34281 Query 7667 CTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTAT 7726 | |||||||| || || || | ||||||||||||||||||||| |||| ||| |||| Sbjct 34282 CAGATATGGCATTCCCTAGATTAAACAATATAAGTTTTTGATTATTACCACCTAGTTTAT 34341 Query 7727 T 7727 | Sbjct 34342 T 34342 >seq1973 Length=9094 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| ||||||||||| || || || || | |||||||| | | ||| Sbjct 5617 ACGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGATAGAGT 5558 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || || ||||| | ||||| ||||| || || || || Sbjct 5557 ACGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAAGCGTTGCTGGTCTGGGGGGATTCC 5498 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || || |||||||| || | || || || | Sbjct 5497 CTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCTATGGTGTCCGACGACTCTACCTCGAG 5438 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 5437 GGTGATGGTCTTACCGGT 5420 >seq47 Length=33200 Score = 105 bits (116), Expect = 2e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 ||| || || || || || || || |||| ||||| || | | || | || || || Sbjct 24289 GACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGTCCGTCCTC 24230 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 || ||||| ||||||||||| | || ||||| || || ||||| || |||||||| || Sbjct 24229 GAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTG 24170 Query 225624 GATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 ||||| ||| ||| ||||||||||| || | || || |||| ||||| ||||| Sbjct 24169 AATCTTGGACTTAACATTATCGATGGTGTCCGAAGACTCAACCTCTAGGGTGATGGTCTT 24110 Query 225684 GCCCGT 225689 |||||| Sbjct 24109 GCCCGT 24104 >seq231 Length=23011 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||| || || | ||| || | ||||| || || ||||| ||||||||||| Sbjct 15344 TTTTGGATATTATAGTCTGACAAGGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 15403 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | || ||||| || || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 15404 AAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 15463 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||| || | || || || | || || ||||| ||||| Sbjct 15464 ATAGTGTCCGAAGACTCGACCTCAAGGGTAATGGTCTTACCCGT 15507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192382242045806