Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1315 208 1e-48 >seq1315 Length=11532 Score = 208 bits (230), Expect = 1e-48 Identities = 575/867 (66%), Gaps = 32/867 (4%) Strand=Plus/Plus Query 77685 GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCA-TATTGTATTATCTCGGTACA 77743 ||||| | || ||||| || ||||||| || || || |||| | ||||| ||||| Sbjct 325 GATGCCAAGTTGCAAACAGCAACCTCATCAG-GTGCACAGTATTCGACAATCTCAGTACA 383 Query 77744 TAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTC 77803 | || | ||| || || ||||| | ||||||||||||| ||||| | || Sbjct 384 CAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATC 443 Query 77804 CTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGAC 77863 ||| ||||| || || || | ||||| ||| | || | |||| ||||| | ||| | Sbjct 444 CTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTACCAAA- 502 Query 77864 GACTCTAGCTTTTAT-CATAGAT--TTGTATCGCCTCTCTCTTTCA------TATTGAGT 77914 |||||| | | ||| || || || | || | ||| |||| Sbjct 503 -------GCTTTTGGGCCTTGATGCTTTTA-CGACCCTTGCCCTCAGACTCGTATTTCTC 554 Query 77915 ATATA--GCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||| | ||| || || || || || | || || |||| ||||| || || || ||| Sbjct 555 ATACAAAGCC--TCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGG 612 Query 77973 CACATCAATGACCAGTC-ACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCA 78031 |||||||||| |||||| | |||| | ||| || ||||| |||||||| || ||||| Sbjct 613 CACATCAATGTCCAGTCGAGGTTCTT-TTCAACACGCTTCATGAAGAGATCTGGAATCCA 671 Query 78032 TAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATC 78091 ||||| || ||||| |||| | | || || ||||| |||||| || || Sbjct 672 GAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTC 731 Query 78092 GAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCG 78151 ||| ||||| | || ||||| |||||||| || || || || || | | | ||||| || Sbjct 732 GAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACG 791 Query 78152 TTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAAT 78211 || ||||| || ||||| | ||||| ||||||||| || |||||| | ||| |||| Sbjct 792 CTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAAC 851 Query 78212 AATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACT 78271 || ||||| || |||| ||||| |||| ||| ||| || |||| || || | Sbjct 852 GATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTG 911 Query 78272 A--ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTA 78329 | || || | || || || || || |||| || || | || ||| |||||||| Sbjct 912 AACATTGAGA--CCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTG 969 Query 78330 TCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGA 78389 || |||||||| || || ||||| ||| |||||| | ||| || || || | ||| Sbjct 970 TCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGT 1029 Query 78390 TGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAA 78449 || || || ||| || | ||| || || || || || || |||| || Sbjct 1030 GCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGAC 1089 Query 78450 AGTAGATTGTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTAC 78508 | | ||||| || || || || | || || ||| || | || ||||| || || || Sbjct 1090 ATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCG-TGGATTCCGACAGCGAC 1148 Query 78509 ACGCATCAACATATGCTGAGGTCTTTC 78535 |||||| | |||||| || || | ||| Sbjct 1149 ACGCATAATCATATGTTGTGGACGTTC 1175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694584145923360