Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 208 1e-48
>seq1315
Length=11532
Score = 208 bits (230), Expect = 1e-48
Identities = 575/867 (66%), Gaps = 32/867 (4%)
Strand=Plus/Plus
Query 77685 GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCA-TATTGTATTATCTCGGTACA 77743
||||| | || ||||| || ||||||| || || || |||| | ||||| |||||
Sbjct 325 GATGCCAAGTTGCAAACAGCAACCTCATCAG-GTGCACAGTATTCGACAATCTCAGTACA 383
Query 77744 TAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTC 77803
| || | ||| || || ||||| | ||||||||||||| ||||| | ||
Sbjct 384 CAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATC 443
Query 77804 CTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGAC 77863
||| ||||| || || || | ||||| ||| | || | |||| ||||| | ||| |
Sbjct 444 CTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTACCAAA- 502
Query 77864 GACTCTAGCTTTTAT-CATAGAT--TTGTATCGCCTCTCTCTTTCA------TATTGAGT 77914
|||||| | | ||| || || || | || | ||| ||||
Sbjct 503 -------GCTTTTGGGCCTTGATGCTTTTA-CGACCCTTGCCCTCAGACTCGTATTTCTC 554
Query 77915 ATATA--GCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972
||| | ||| || || || || || | || || |||| ||||| || || || |||
Sbjct 555 ATACAAAGCC--TCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGG 612
Query 77973 CACATCAATGACCAGTC-ACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCA 78031
|||||||||| |||||| | |||| | ||| || ||||| |||||||| || |||||
Sbjct 613 CACATCAATGTCCAGTCGAGGTTCTT-TTCAACACGCTTCATGAAGAGATCTGGAATCCA 671
Query 78032 TAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATC 78091
||||| || ||||| |||| | | || || ||||| |||||| || ||
Sbjct 672 GAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTC 731
Query 78092 GAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCG 78151
||| ||||| | || ||||| |||||||| || || || || || | | | ||||| ||
Sbjct 732 GAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACG 791
Query 78152 TTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAAT 78211
|| ||||| || ||||| | ||||| ||||||||| || |||||| | ||| ||||
Sbjct 792 CTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAAC 851
Query 78212 AATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACT 78271
|| ||||| || |||| ||||| |||| ||| ||| || |||| || || |
Sbjct 852 GATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTG 911
Query 78272 A--ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTA 78329
| || || | || || || || || |||| || || | || ||| ||||||||
Sbjct 912 AACATTGAGA--CCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTG 969
Query 78330 TCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGA 78389
|| |||||||| || || ||||| ||| |||||| | ||| || || || | |||
Sbjct 970 TCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGT 1029
Query 78390 TGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAA 78449
|| || || ||| || | ||| || || || || || || |||| ||
Sbjct 1030 GCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGAC 1089
Query 78450 AGTAGATTGTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTAC 78508
| | ||||| || || || || | || || ||| || | || ||||| || || ||
Sbjct 1090 ATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCG-TGGATTCCGACAGCGAC 1148
Query 78509 ACGCATCAACATATGCTGAGGTCTTTC 78535
|||||| | |||||| || || | |||
Sbjct 1149 ACGCATAATCATATGTTGTGGACGTTC 1175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694584145923360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |